BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg333222 Length=1026 Score E Sequences producing significant alignments: (Bits) Value AT5G35810.1 | Symbols: | Ankyrin repeat family protein | chr5:... 388 4e-107 > AT5G35810.1 | Symbols: | Ankyrin repeat family protein | chr5:13993428-13994549 REVERSE LENGTH=1044 Length=1044 Score = 388 bits (210), Expect = 4e-107 Identities = 716/949 (75%), Gaps = 79/949 (8%) Strand=Plus/Plus Query 100 CTACTCTTTGATGCTGCATC-ATGTGGAAATGTCGAG-TTCCTAGTCATTCTTATTCGTT 157 |||||||||||||||||| | || ||||||| | ||| || || | ||||| ||||||| Sbjct 100 CTACTCTTTGATGCTGCA-CAATCTGGAAATCTTGAGCTT-TTACTTATTCTCATTCGTT 157 Query 158 CGTATCCAGATTTGATATGGAAAGTCGAT-AGAAGAAACCGAAGCTTGTTTCACATTGCT 216 | ||||||||| ||||||||| || ||| | ||| |||| ||||||||| ||||||||| Sbjct 158 CTTATCCAGATCTGATATGGACGGTGGATCATAAG-AACCAAAGCTTGTTCCACATTGCT 216 Query 217 GCTATAAATCGTCATGAAAGCATCTTCAACATCATATATGAACTCGGAGCAATCAAGGAC 276 ||||||||||||||||||| ||||| || | || ||||||||||| || ||||| || Sbjct 217 GCTATAAATCGTCATGAAAAAATCTTTAATAGAATCTATGAACTCGGGGCCATCAAAGAT 276 Query 277 TTAATAGCT-TCT-TATCGAGAA-GAAGCCA-CAAATAATACTCTGTTGCATCTTGTTGC 332 || |||||| | | || ||||| ||| ||| | | || || ||||||||||||| || Sbjct 277 TTGATAGCTATGTATAAAGAGAAAGAATCCAACGAC-AA--CT-TGTTGCATCTTGTGGC 332 Query 333 AAGCTTGCCTCCTC-ATGATCGACTACATA-TTGTATCAGGGGCTGCACTTCAAATGCAA 390 | | || || |||| | || | |||| | |||||||||| || |||||||| |||||| Sbjct 333 ACGTTTACCACCTCCAA-ATAGGTTACA-AGTTGTATCAGGAGCAGCACTTCAGATGCAA 390 Query 391 AGAGAGATTCTTTGGTTCAAGGCTGTGAAAAAGATTGTTCCTCGT-TCATACATCAAATC 449 |||||||||||||||| ||||||||| ||| |||| ||||||||| | |||||||||| | Sbjct 391 AGAGAGATTCTTTGGTACAAGGCTGTTAAAGAGATAGTTCCTCGTGT-ATACATCAAAAC 449 Query 450 AAAGAATAAAGAAGGGGAATTAGCGCAAGA-CATCTTTACTAATG-GACACAAAGAA-TT 506 |||||| ||| ||| ||| | ||||| || | | ||||| || | | || | || || Sbjct 450 AAAGAACAAAAAAGAGGAGGTGGCGCATGATC-TATTTACGAAAGAG-CATGAC-AACTT 506 Query 507 ACGGAAAGAAGGAGAGAAATGGATGAAAGATACTGCAACAT-CATGTATGCTTGTAGCAA 565 ||| |||||||||||||||||||||||||| ||||| || | |||| || |||||| ||| Sbjct 507 ACGCAAAGAAGGAGAGAAATGGATGAAAGAAACTGCGAC-TGCATGCATTCTTGTATCAA 565 Query 566 CGCTAATAGCAACGGTAGTTTTTGCCGCGGCCTTTAC-CGTACCAGGAGGGAACAAT--G 622 | || |||||||| || || ||||| || |||||||| | |||| || || ||| || | Sbjct 566 CACTGATAGCAACTGTGGTCTTTGCAGCTGCCTTTACTC-TACCTGGTGGAAACGATACG 624 Query 623 AA-G---A-AT-----CA---GGACTTCC-TATCCTCCaaaaaa-aGAAATGGTTT-AAT 666 | | | || || || ||||| || | | | ||| || |||||| || Sbjct 625 AGTGGCGACATAAAAACACTAGG-CTTCCCTA-CTTTTAGAAAGGAGTTCTGGTTTGAAG 682 Query 667 ATATTTATCCTATCGGATGCGGTCGCGCTA-TGCTCCTCC-TCAACATCTAT-AGTGAT- 722 | |||||| |||| ||| |||| || || | || || | | ||||||| | |||| Sbjct 683 -TGTTTATCATATCAGATTCGGTTGCCCTCCTA-TCATCTGTGA-CATCTATTA-TGATA 738 Query 723 TTTCTTGTCAATCTTGACGTCAAGATATGCTGAAGATGATTTTCTTGT-GTCATTACCCT 781 ||| ||||||||| |||| || | ||||| |||| | | |||| | | | ||||| Sbjct 739 TTT-TTGTCAATCCTGACATCTCGTTATGCAGAAGCT-AGTTTCCAGACGACTTTACCAA 796 Query 782 C-AAGGCTAATGTTGGGACTTTTGGCATTGTTTGTCTCCATTATCGCAATGGT-CATAGC 839 | ||| ||||||||||||||||| ||||||||||| || ||||| ||||||| | | || Sbjct 797 CGAAG-CTAATGTTGGGACTTTTAGCATTGTTTGTTTCAATTATTTCAATGGTTCTT-GC 854 Query 840 TTTCTGTGCGACGTT-ATTCTTGATCTATGACCGGAGA-C-TCGCGTGGAATTTAG-CCT 895 ||| ||||| || || ||||||| ||| | ||| | | |||| ||| ||| Sbjct 855 CTTCACAGCGACATTGAT-CTTGATCCGTGATCA-AGAACCTAAA-TGGAGCTTAATCCT 911 Query 896 TCATTA-TTTCACTTG-CTTCAATCACAGCTTTTTCGTTTGCCTTGCTACATGTGCAGCT 953 | ||| ||| || || |||| ||| ||| | || |||| || | ||| | ||||| Sbjct 912 -C-TTAGTTT-ACGTGGCTTCTGCCACGGCTCTCTCATTTGTGGTGTTGCATTTTCAGCT 968 Query 954 TTGGTTTGACACACTTCGATCAGCCTAT-TGGTCCAAGTTCCTCTTTCA 1001 |||||||||||||||||| ||||||||| || || |||||||||||||| Sbjct 969 TTGGTTTGACACACTTCGCTCAGCCTATCTG-TCTAAGTTCCTCTTTCA 1016 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50284381147 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5