BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333224
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13740.1 | Symbols: | Ribonuclease III family protein | chr... 736 0.0
> AT3G13740.1 | Symbols: | Ribonuclease III family protein | chr3:4504270-4506236
FORWARD LENGTH=1083
Length=1083
Score = 736 bits (398), Expect = 0.0
Identities = 448/472 (95%), Gaps = 4/472 (1%)
Strand=Plus/Plus
Query 1 ATGGTGATTTTATCGGCGAGCTCCACCGTGAGAGCTGCCTTAGATACACAACCTAGACTT 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 41 ATGGTGATTTTATCGGCGAGCTCCACTGTGAGAGCTGCCTTAGATACACAACCTAGACTT 100
Query 61 CCGTACAACCCTAATGCGCCGCGAAAAGTTAAGAAAACCCCTAACAATAATTCATTCTTA 120
|| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 101 CCCTACAACCCTAATGCGCCGCGAAAAGTTAAGAAAATCCCTAACGGTAATTCATTCTTA 160
Query 121 CCACCACCGTCACCTCCACCGTCTCCAGGAATCAGCATCTCCGTCGCTGATTTGCTCAAG 180
|| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 161 CCGCCGCCGTCACCTGCACCGTCTCCAGGAATCAGCATCTCCGTCGCCGATTTGCTCAAG 220
Query 181 CGTCCCGCAAGTAAAGA-ATTAACTGTTGACGTTGATGATACGTATATGGGATATGAGAC 239
||||| |||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 221 CGTCCTTCAAGTAAAGAGA-TAACTGTTGACGTTGATGATACTTATATGGGATATGAGAC 279
Query 240 ATGGTCTCCAAGTCCACCAAAGTTGGAGAAACCAAGATCAGTCTTCAATGCTGCTTCTTT 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 280 ATGGTCTCCAAGTCCACCAAAGTTGGAGAAACCAAGATCAGTCTTCAATCCTGCTTCTTT 339
Query 300 GGCCTTCATAGGCGATTCCATTTTTGAGCTATATGCTCGTAGGCATTTTCTTTTCCCTCC 359
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 340 AGCCTTTATAGGCGATTCCATTTATGAGCTATATGCTCGTAGGCATTTTCTTTTCCCTCC 399
Query 360 GCTCAGTATTGAAGATTATAACGATCGTGTTAGAGCAGTGGTGCGCTGTGAAGCACAGTA 419
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 400 GCTTAGTATTGAAGATTATAACGATCGTGTTAGAGCTGTGGTGCGCTGTGAAGCTCAGTA 459
Query 420 TGCTTTGCTGAAGAAACTTGTTGATGATGACTT-CTTAACAAAGGAAGAGAG 470
|||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 460 TGCTTTGCTGAATAAACTTGTTGATGATGACTTTCT-AACAAAGGAAGAGAG 510
Score = 163 bits (88), Expect = 2e-39
Identities = 116/128 (91%), Gaps = 7/128 (5%)
Strand=Plus/Plus
Query 473 AAATAATGCAGAAGCTAGGATTCTCAAGCGACTCTTCAACTGAGATCGTGATTGAAGAGG 532
|||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 654 AAATAATGGAGAAGCTAGGATTCTCAAGTGATTCTTCAACTGAGATCGTGATTGAAGAAA 713
Query 533 CCAAGCCC-AAACCATCAGAATC--C-AACCT-CTCAAACTTCATACTCAACGAGCAAGT 587
|||| ||| |||||||||||||| | ||||| | |||||||||||||||||||||||||
Sbjct 714 CCAA-CCCTAAACCATCAGAATCATCCAACCTGC-CAAACTTCATACTCAACGAGCAAGT 771
Query 588 GGTGTCAT 595
||||||||
Sbjct 772 GGTGTCAT 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28733932084
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5