BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333229
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein | chr... 649 0.0
AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | ch... 412 1e-114
AT2G37470.1 | Symbols: | Histone superfamily protein | chr2:15... 285 2e-76
AT1G07790.1 | Symbols: HTB1 | Histone superfamily protein | chr... 244 4e-64
> AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein | chr5:24127128-24127935
FORWARD LENGTH=808
Length=808
Score = 649 bits (351), Expect = 0.0
Identities = 377/390 (97%), Gaps = 0/390 (0%)
Strand=Plus/Plus
Query 25 gagaaatcaaaagccgagaaagctccggcggagaagaaaccaaagGCCGGAAAGAAACTC 84
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 142 GAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAGGCCGGAAAGAAGCTC 201
Query 85 CCGAAGGAGGCTGGTGCTGGAGGTGACAAGAAGAAAAAGATGAAGAAGAAGAGTATCGAG 144
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||||
Sbjct 202 CCGAAGGAAGCTGGTGCCGGAGGCGACAAGAAGAAAAAGATGAAGAAGAAGAGTGTCGAG 261
Query 145 ACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAATCTCA 204
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 ACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAATCTCC 321
Query 205 AGCAAAGCGATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTTGCTCAA 264
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 322 AGCAAAGCGATGGGGATCATGAACAGTTTCATTAACGATATCTTCGAGAAGCTTGCTCAA 381
Query 265 GAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCACGTCCCGGGAGATTCAG 324
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 382 GAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACGATCACTTCTCGGGAGATTCAG 441
Query 325 ACTGCTGTGAGATTGGTGCTTCCTGGAGAGTTGGCGAAGCATGCTGTTTCTGAGGGGACT 384
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 442 ACTGCTGTGAGATTGGTGCTTCCTGGAGAGTTGGCGAAGCATGCCGTTTCTGAGGGGACT 501
Query 385 AAGGCCGTCACGAAATTCACCAGCTCTTGA 414
|| |||||||||||||||||||||||||||
Sbjct 502 AAAGCCGTCACGAAATTCACCAGCTCTTGA 531
> AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein |
chr3:16913448-16914131 REVERSE LENGTH=684
Length=684
Score = 412 bits (223), Expect = 1e-114
Identities = 341/398 (86%), Gaps = 8/398 (2%)
Strand=Plus/Plus
Query 21 agaagagaaatcaaaagccgagaaagctccggcggagaagaaaccaaagGCCGGAAAGAA 80
||| |||||||||||||||||||||||||| || |||||||||||||| ||||| |||||
Sbjct 125 AGAGGAGAAATCAAAAGCCGAGAAAGCTCCTGCAGAGAAGAAACCAAAAGCCGGCAAGAA 184
Query 81 ACTCCCGAAGGAGGCTGGTGCTGGAGGTGACAAGAAGAAAAAGATGAAGAAGAAGAGTAT 140
|||||||||||| || ||||| || || || |||||||| |||||||||||||||||| |
Sbjct 185 ACTCCCGAAGGAAGCCGGTGCCGGCGGCGATAAGAAGAAGAAGATGAAGAAGAAGAGTGT 244
Query 141 CGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAAT 200
||||| ||||||||||||||||||||||| || || ||||||||||| ||||| || ||
Sbjct 245 TGAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATATTGGTAT 304
Query 201 CTCAAGCAAAGCGATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTTG- 259
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 305 TTCAAGCAAAGCTATGGGGATTATGAACAGTTTCATCAACGACATCTTTGAGAAA-TTGG 363
Query 260 C-TCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCACGTCCCGGGAG 318
| || || |||||||||| |||||||| |||||||| || || || || || ||||||
Sbjct 364 CATCG-GAATCGTCGAAGCTCGCGAGGTATAATAAGAAGCCGACGATTACTTCTCGGGAG 422
Query 319 ATTCAGACTGCTGTGAGA-TTGGTGCTTCCTGGAGAG-TTGGCGAAGCATGCTGTTTCTG 376
|||||||||||||| ||| ||| | |||||||| ||| ||| |||| |||||||||||||
Sbjct 423 ATTCAGACTGCTGTTAGACTTGTT-CTTCCTGGTGAGCTTG-CGAAACATGCTGTTTCTG 480
Query 377 AGGGGACTAAGGCCGTCACGAAATTCACCAGCTCTTGA 414
| || |||||||| || || || || || |||||||||
Sbjct 481 AAGGAACTAAGGCGGTGACTAAGTTTACTAGCTCTTGA 518
> AT2G37470.1 | Symbols: | Histone superfamily protein | chr2:15736764-15737368
FORWARD LENGTH=605
Length=605
Score = 285 bits (154), Expect = 2e-76
Identities = 307/379 (81%), Gaps = 17/379 (4%)
Strand=Plus/Plus
Query 36 agccgagaaagctccggcggagaaga-aaccaaagGCCGGA-AAGAAACTCCCG-AAGGA 92
||||| |||||||||||||||||| | ||||||| |||| |||||| | | | || ||
Sbjct 113 AGCCGGGAAAGCTCCGGCGGAGAA-ACTCCCAAAGG-CGGAGAAGAAAAT-CAGCAAAGA 169
Query 93 GGCTGGTGCTGGAGGTGACAAGAAGAAAAAGATGAA--GAAGAAGAGTATCGAGACTTAC 150
|| | | ||| | || |||||||| |||| || ||||||||| |||||||||||
Sbjct 170 CGC-CG-G-AGGAAGCGAGAAGAAGAAGAAGA--AATCGAAGAAGAGCGTCGAGACTTAC 224
Query 151 AAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAATCTCAAGCAAA 210
|||||||||||||||||||| || || ||||||||||| ||| | |||||||| | |||
Sbjct 225 AAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGAATCTCTGGGAAA 284
Query 211 GCGATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTTGCTCAAGAGGCG 270
|| |||||||||||||||||||||||||| || ||||||||||| |||||||| || ||
Sbjct 285 GCTATGGGGATTATGAACAGTTTCATCAATGACATCTTCGAGAAACTTGCTCAGGAATCG 344
Query 271 TCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCACGTCCCGGGAGATTCAGACTGCT 330
|| ||||| || |||||||||||||| || || || || || |||||||||| || |||
Sbjct 345 TCAAAGCTCGCTAGGTACAATAAGAAGCCGACGATTACATCGAGGGAGATTCAAACCGCT 404
Query 331 GTGAGA-TTGGTGCTT-CCTGGAGAGTTGGCGAAGCATGCTGTTTCTGAGGGGACTAAGG 388
|||||| ||| || || |||||||| | || || ||||| |||||||| || || ||||
Sbjct 405 GTGAGACTTG-TG-TTGCCTGGAGAACTCGCTAAACATGCGGTTTCTGAAGGCACGAAGG 462
Query 389 CCGTCACGAAATTCACCAG 407
| || || |||||||||||
Sbjct 463 CGGTTACCAAATTCACCAG 481
> AT1G07790.1 | Symbols: HTB1 | Histone superfamily protein | chr1:2412980-2413708
FORWARD LENGTH=729
Length=729
Score = 244 bits (132), Expect = 4e-64
Identities = 300/379 (79%), Gaps = 19/379 (5%)
Strand=Plus/Plus
Query 43 aaa-gctccggcggagaagaaaccaaagGCCGGAAAGAAACT--C-CCGAAGGAGGCTGG 98
||| |||||||||||||||||||| ||||| || |||||| | | || ||||| ||
Sbjct 150 AAAGGCTCCGGCGGAGAAGAAACCCAAGGCGGGGAAGAAATTGCCACCAAAGGAAGC--- 206
Query 99 TGCTGGAGGTGACAAGAAGAA-AA-AGAT-GAAGAAGAAGAGTATCGAGACTTACAAGAT 155
| |||||||||||||| || ||| ||||| || | |||| || ||||||||
Sbjct 207 --C----GGTGACAAGAAGAAGAAGCGATCTAAGAA-AA-A-CGTCGAAACCTACAAGAT 257
Query 156 CTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAATCTCAAGCAAAGCGAT 215
|||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||| ||
Sbjct 258 CTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGATATCGGAATTTCAAGCAAAGCCAT 317
Query 216 GGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTTGCTCAAGAGGCGTCGAA 275
||||||||||||||||||||||||||| || ||||||||||| ||||| || | |||||
Sbjct 318 GGGGATTATGAACAGTTTCATCAACGACATATTCGAGAAGCTAGCTCAGGAATCTTCGAA 377
Query 276 GCTTGCGAGGTACAATAAGAAACCTACTATCACGTCCCGGGAGATTCAGACTGCTGTGAG 335
|| || |||||||| ||||| || || || || || || ||||| ||||| ||||||||
Sbjct 378 ACTCGCTAGGTACAACAAGAAGCCGACCATTACATCTCGCGAGATCCAGACGGCTGTGAG 437
Query 336 ATTGGTGCTTCCTGGAGAGTTGGCGAAGCATGCTGTTTCTGAGGGGACTAAGGCCGTCAC 395
| | || || || || || | || || || || || ||||| || || ||||| || ||
Sbjct 438 ACTCGTCCTCCCCGGTGAACTCGCTAAACACGCCGTCTCTGAAGGTACCAAGGCGGTTAC 497
Query 396 GAAATTCACCAGCTCTTGA 414
|| || || |||||||||
Sbjct 498 CAAGTTTACTAGCTCTTGA 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19604422110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5