BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333231
Length=2952
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56240.2 | Symbols: | INVOLVED IN: biological_process unkno... 4106 0.0
AT5G56250.2 | Symbols: HAP8 | hapless 8 | chr5:22768577-2277289... 230 8e-59
> AT5G56240.2 | Symbols: | INVOLVED IN: biological_process unknown;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
hapless 8 (TAIR:AT5G56250.1). | chr5:22759805-22764587 REVERSE
LENGTH=3532
Length=3532
Score = 4106 bits (2223), Expect = 0.0
Identities = 2763/3008 (92%), Gaps = 100/3008 (3%)
Strand=Plus/Plus
Query 1 ATGTTCTTATCCACTGAGAACCCACCAAATGACCCActttcttcttcttcttctcc-tcc 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 286 ATGTTCTTATCCACTGAGAACCCACCAAATGACCCACTTTCTTCTTCTTCTTCTCCTTTC 345
Query 60 tttcttacatctccccacttcttccCATGAGTTAGGTCAATCCCATCTCTCCAATTTCTC 119
|| | ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TTAC-AACATCTCACCTCTTCTTCCCATGAGTTAGGTCAATCCCATCTCTCCAATTTCTC 404
Query 120 CATCAGAGATTACGCATATAGTAACCGGAAGAACAACATCAAGAACAATTGGCCATTTTC 179
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 405 CATCAGAGATTACGCATATAGTAACAGGAAGAACAACATTAAGAACAATTGGCCATTTTC 464
Query 180 CTCAAAAAGTCTCCAACTTTTCTCAACTCATGGCATAACTGATCCTTTGCCACCGTTACA 239
||||||||||||||| |||||||||||||||||| ||||| ||||||| |||||||| ||
Sbjct 465 CTCAAAAAGTCTCCAGCTTTTCTCAACTCATGGCGTAACTAATCCTTTACCACCGTTTCA 524
Query 240 GAAAG-TTTCCACCGTAAGTAACCAGTTTGAGACCAAGGCTAGTTCATCGTCGGGGAAGC 298
| ||| ||||||| ||||||| | |||||||||||| |||||| | || || |||||||
Sbjct 525 G-AAGTTTTCCACAGTAAGTAGCAAGTTTGAGACCACTGCTAGTCCGTCTTCCGGGAAGC 583
Query 299 AAATCG--T-ATCCTATGTTCATCATGG-A-AGA----GATTTGGCTAAACTTGGGTTGA 349
|||| | | ||||||||||||||| || | ||| |||||||||||||||||||| |
Sbjct 584 AAATAGTATCATCCTATGTTCATCAAGGAAGAGATTTGGATTTGGCTAAACTTGGGTTAA 643
Query 350 ATCAGACATTAGCAGAGACTAGTA--AAGGAGGAGTTAGTAGCCAATCAAGAATCATCGA 407
|||||||| ||||||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct 644 ATCAGACAGTAGCAGAGACTAGTAGTAA--AGGAGTTTGTAGCCAATCAAGAATCATCGA 701
Query 408 GAATGGTTTGTTTTCGAGTACAAGTGTTTCCAAGTCTGAAGTAGAGATAGTTGTAGCTGC 467
||||||||||||| |||| |||||||||||||||||||||||||||||| | |||||| |
Sbjct 702 GAATGGTTTGTTTCCGAGCACAAGTGTTTCCAAGTCTGAAGTAGAGATACTAGTAGCTAC 761
Query 468 TACAAGTAACAAGAAGGACAACCACAGTAAAAAGTGTGGAAGAGGGATGGTGAAATCTAA 527
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 762 TACAAGTAACAAGAAGGACAACCACAGTAGAAAGTGTGGACGAGGGATGGTGAAATCTAA 821
Query 528 AGAAGATAGTTGTGGTGGCCTTGTGACGACTTCTGAATCAATAATGGCTTCAAAAACATG 587
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 822 AGAAGATAGTTGTGCTGGCCTTGTGACGACTTCTGAGTCAATAATGGCTTCAAAAACATG 881
Query 588 TCCTATTTGCAAAACCTTCTCCTCAGCTTCTAACACAACTTTGAATGCTCACATCGACCA 647
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 882 TCCTATTTGCAAAACCTTCTCTTCAGCTTCTAACACAACTTTGAATGCTCACATCGATCA 941
Query 648 GTGTTTGTCTGTTGACTCAG--C-ACTGCCACCGGTTGTTAGTAGTAAGCCAAACAAGCC 704
|||| ||||||||||||||| | ||| |||||||||||| ||||||||||||||||||
Sbjct 942 GTGTCTGTCTGTTGACTCAGCACTACTACCACCGGTTGTTTTTAGTAAGCCAAACAAGCC 1001
Query 705 TAGAAGTAAG---CCACGGGTGAAAGTTAAAACGATGGTTGATATCTACGCTTCTGCGAA 761
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1002 TAGAAGTAAGCCACCACGGGTGAAAGTTAAAACAATGGTTGATATCTACGCTTCTGCGAA 1061
Query 762 AGAAGGCACATTAGAAGATCTTGATAAAAGAAATGGAACAAAGTGGGTGTCGATTTTGAG 821
| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1062 ACAAGGCACGTTAGAAGATCTTGATAGAAGAAATGGAACAAAGTGGGTGTCGATTTTGAG 1121
Query 822 TTATACAAATAGAGTTGTTGCTGAGAAGTCTGAAGTGTCTAAGAAGCGGAAAGTTTCGCC 881
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1122 TTATTCAAATAGAGTTGTTGCTGATAAGTCTGAAGTGTCTAAGAAGCGGAAAGTCTCGCC 1181
Query 882 TGTTGGCGTTGGTCCGGTTTATATTGATGCTAAGGGGCAGAAATTGCGGATTTTATCTGA 941
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1182 TGTTGGTGTTGGTCCGGTTTATATTGATGCTAAGGGACAGAAATTGCGGATTTTATCCGG 1241
Query 942 GTTCAGCGAGAAGAAGACTTCTACTACTCCGTCGAGAGAACAGCATGAGGATGGTAGTGG 1001
||||||||||||||||| |||||||||||||| ||| || |||||||||||||||||| |
Sbjct 1242 GTTCAGCGAGAAGAAGAGTTCTACTACTCCGTTGAGGGAGCAGCATGAGGATGGTAGTAG 1301
Query 1002 TGGTAAGAAATGTTTAAGCCAAGGTAGTAAA-GGACACAATAAATGCTTGAGGAAAATTC 1060
|| ||||||||||||| |||||||||||||| |||| ||||||| |||||||||||||||
Sbjct 1302 TGATAAGAAATGTTTAGGCCAAGGTAGTAAAGGGAC-CAATAAAAGCTTGAGGAAAATTC 1360
Query 1061 GTCGAGTAAAGAAGCCTCACAAGTATGTTAAACTAACCAATCACAAAGCTAATGCTCC-- 1118
| || | |||||| |||||||||| |||||||||||||||||||||||| ||| |||
Sbjct 1361 GCCGTGGAAAGAAACCTCACAAGTTTGTTAAACTAACCAATCACAAAGCCGATGGTCCAG 1420
Query 1119 AG-AGATAC-CTGGAGAT-CAAAGAGGTTTTTCTGGAGAAGGTAGTCACACT-GGTCATC 1174
|| |||||| | |||| | |||||||| |||||||||||||||||||||| | |||||||
Sbjct 1421 AGCAGATACGC-GGAG-TGCAAAGAGGGTTTTCTGGAGAAGGTAGTCACA-TGGGTCATC 1477
Query 1175 A---TAGAATCCATAATCAGCGGATGCTAGCGAAACGTGGTCTGATTTCGAAGAAGCTAA 1231
| ||||||| ||||||| ||||||||||| |||||||||||| |||| ||||||||||
Sbjct 1478 ATCGTAGAATCTATAATCAACGGATGCTAGCAAAACGTGGTCTGGTTTCAAAGAAGCTAA 1537
Query 1232 ATGAGAAAGGACATG-A--AT-T----AT-AT---GATACATGGTCAGGAGGAGATCCTA 1279
||||||||||||||| | || | || || |||||||||||||||||||||||||
Sbjct 1538 ATGAGAAAGGACATGAATTATCTGAAGATGATGAAGATACATGGTCAGGAGGAGATCCTA 1597
Query 1280 CTGTGTTGAGAGGTACTGATTTGTTTGCCACAGATTCTTATCCTTTATATAAACAGAAGC 1339
|||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||
Sbjct 1598 CTGTGTTGAGAGGTACTGATTTGTCTGCCACAGATTCTTATCCTTTAAAGAAACAGAAGC 1657
Query 1340 TGGGGAGCGAAGTTGCTCGACCAAAAAAGGCTTTGTTTGGGAGTAAAAGTGCTCAAAGTC 1399
||||||||||||||||| ||| ||||||| |||||||| ||||| |||||||||||||||
Sbjct 1658 TGGGGAGCGAAGTTGCTGGACGAAAAAAGACTTTGTTTAGGAGTCAAAGTGCTCAAAGTC 1717
Query 1400 GTTCATTTAGAGTCCCTCAGAGTGAAAAAGAAGATGAGTCACTTGAGGGAATTCAAATA- 1458
||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 1718 GTTCATTTAGAGTCCCTCAGAGTGAAAAAGAGGATGAGTCACTTGAGGGAGTT--AATAT 1775
Query 1459 AACACTCTCCGATTAAAGAAGAGCATTGCTTCATTTCAAGAAGATAAGTATCCACCTGGA 1518
|| | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1776 AA-A----CCGATTAAAGAAGAGCGTTGCTTCATTTCAAGAAGATAAGTATCCACCTGGA 1830
Query 1519 AAGAATTTCTGCTCAGATGCTGTAGATGTTTCAGATGCATCTCCTCGTGGAACTAGCATG 1578
||| | || | | | || ||||||||||||||||||||||||||||||
Sbjct 1831 AAG-A---------AG-T--T-T---TG-CTCAGATGCATCTCCTCGTGGAACTAGCATG 1872
Query 1579 AGAAAGTTTTCCCCACCTTTTGTACCAAATGCCTGGAGGCGACTATCTGTGCCTGTGGAG 1638
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1873 AGAAAGTTTTCCCCACCTTTTGTACCAAATGCCTGGAGACGACTATCTATGCCTGTGGAG 1932
Query 1639 CTAAATAAAGCTCGGTTGGATTTCTCGGAGGAAGAAGATGAAGAAGAAACAGGGAAATGG 1698
||||| |||||||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct 1933 CTAAAGAAAGCTCGGTTGGATTTCTCTGAGGAAAAAGATGATGAAGAAACAGGGAAATGG 1992
Query 1699 GAATCTGAAATGACTCAAGAACGTGAGCTGCCAGATAATGATTATGTTTCTGGTGATAAT 1758
||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||
Sbjct 1993 GAATCTGAAATGACTCATGAACGTGAGCTGCGAGATGATGATTATGTTTCTGGTGATGAT 2052
Query 1759 GGAGAAAGA-AATGAGGTCTTACTGAGATCAAATCCTTCATCTAGTGGTTACGATGATTA 1817
|| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2053 GGGGAAA-ATAATGAGGTCTTACTGAGATCAAATCCTTCATCTAGTGGTTACGATGATTA 2111
Query 1818 TAATGATGATGACGACGAAAGTAGTGAAGAGGAAGAAGCTAATAACAAAAGAGCTCATGT 1877
||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2112 TAATGATGATGACGAAGAAAGTAGTGAAGAGGAAGGAGATAATAACAAAAGAGCTCATGT 2171
Query 1878 TTTGGACAAAACTGATGATATGGGTGCTGAGTTCTA-C---C--AGTCAGACAGTCCACC 1931
|||||| |||| ||| ||| |||||||||||||| | | |||||||||||||| |
Sbjct 2172 GTTGGACCAAACCGATTATACAGGTGCTGAGTTCTACCAGTCAGAGTCAGACAGTCCAAC 2231
Query 1932 ATCTATTGAAATCTTACCCAGAGAGCGAGCAATGTATTACTCCGAAGTTGGGAATATGAT 1991
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 2232 ATCTATTGAAATCTTACCCAGCGAGCGAGCAATGTATTACTCCGAAGCTGGGAATATGAT 2291
Query 1992 TTACGGGCAAACCTCTTGCAAGGAGAATGAAAGGCTTGATTCTGTAGTTGGACAAGGAAG 2051
||||||||||||||||||||||||| |||||||| ||||||||| ||| |||||||||||
Sbjct 2292 TTACGGGCAAACCTCTTGCAAGGAGGATGAAAGGTTTGATTCTGAAGTAGGACAAGGAAG 2351
Query 2052 CTTATTTGTAGAGGTTGATACCATTCCTATTCCAGGACCTCCAGGATCATTTTTACCAAG 2111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2352 CTTATTTGTAGAGGTTGATACCATTCCTATTCCAGGACCTCCAGGATCATTTTTACCAAG 2411
Query 2112 TCCTCGAGATATGGGTTTTGATGAGAATCTTGGGAACTCGTCGGTTATCACAAGCCAGGT 2171
|||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2412 TCCTAGAGATATGGGTTTTGATGAAAATCTTGGGAACTCGTCGGTTATTACAAGCCAGGT 2471
Query 2172 TCAGTCTTCCATGGATCAGCTTGACAGAAACTCATCTGAATCACCTGTTTCCGCAGTTTC 2231
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2472 TCAATCTTCCATGGATCAGCTTGACAGAAACTCATCTGAATCACCTGTTTCCGCTGTTTC 2531
Query 2232 AAACTTTGCAGCTGGTAGATTGAATTTTCCAGCAGAGTTATCTTCTACTTTCCGAGAAAA 2291
|||||||||||||||||||||||||||||| || |||||||| | | |||||||||||||
Sbjct 2532 AAACTTTGCAGCTGGTAGATTGAATTTTCCTGCTGAGTTATC-T-T-CTTTCCGAGAAAA 2588
Query 2292 TTTCTCACCGGATATTGCCATGTCCTACTCAACAACCTCGATGGGCTTTTGTGTTCCATC 2351
|||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2589 TTTCTCCCCGGATATTGCCATGTCCTACTCAACAACCCCGATGAGCTTTTGTGTTCCATC 2648
Query 2352 TCATCATGGGACAA-C-C-GAGGCTGAGCCAATTACCATTGACAAGACAACATTACCTTC 2408
|||||||||||||| | | ||||||||||||||||||||||||||||||| || ||||||
Sbjct 2649 TCATCATGGGACAATCACTGAGGCTGAGCCAATTACCATTGACAAGACAATATCACCTTC 2708
Query 2409 CAGATTTAGAAACAATGATCAAGAGTCTTGTTGTTGCCAAAGAAAAGAGAGAATCTCCGA 2468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2709 CAGATTTAGAAACAATGATCAAGAGTCTTGTTGTTGCCAAAGAAAAGAGAGAATCTCCGA 2768
Query 2469 GGGCATTACTCGGAATCATCAAGGATCTCACTTGCTGCAGCGAAGAGCAGCTTCTTCGTC 2528
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2769 GGGCATTACTTTGAATCATCAAGGATCTCACTTGCTGCAGCGAAGAGCAGCTTCTTCGTC 2828
Query 2529 AATCACGATGAACTTAACTAATTCACCCACACGTTTGGATCCAAATCATCCATTTGAGCA 2588
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2829 AAACACCATGAACTTAACTAATTCACCCACACGTTTGGATCCAAATCATCCATTTGAGCA 2888
Query 2589 GTCACCATACAAGATCCAACAAGCTTTGGATC-TC-CA-GAGTAAGTTCTCCAGCA-GAA 2644
|||||||||||||| ||||||||||||||||| || | ||||||||||||||||| |||
Sbjct 2889 GTCACCATACAAGACCCAACAAGCTTTGGATCTTCAGATGAGTAAGTTCTCCAGCAGGAA 2948
Query 2645 CGAATCCCAACGCCGTTGTGCCTCCAAGTCCTTCTAACCCGGTTTTAAGGTTAATGGGAA 2704
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2949 -GAGTCTCAACGCCGTTGTGCCTCCAAGTCCTTCTAACCCGGTTTTAAGGTTAATGGGAA 3007
Query 2705 AAGACTTGATGGTCATGAACCAAGGAGAAGCAGATGAAGAAGCATCCCGGTCTAGCTTAA 2764
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3008 AAGACTTGATGGTCATGAACCAAGGAGAAGCAGATGAAGAAGCATCCCGGTCAAGCTTAA 3067
Query 2765 CACCAACCCCTCAGTTTGTTGATCCTCCTTGTGGTGGAACTGGCTTATACTTCAACACAG 2824
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3068 CACCAAATCCTCAGTTTGTTGATCCTCCTTGTGGTGGAACTGGCTTATACTTTAACACAG 3127
Query 2825 GTCTCTATTTAAGAAACAGTTTCGAGTcaacacaacaaccacaagcccaaacccaaccac 2884
||||||| ||||||||||||||||| |||||||| |||||||||| ||| | |||| |
Sbjct 3128 GTCTCTACTTAAGAAACAGTTTCGATTCAACACATCAACCACAAGTTCAAGCACAAC-A- 3185
Query 2885 aaccacaaccacaaGCTGCAGCATTCAGAAACAATTTTGATCATGTAAGATACTTTTCTC 2944
| | | | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3186 A-C-A-ATC-ACAAGCTGCAGCATTCAGAAACAATTTTGATCATGTAAGATACTTTTCTC 3241
Query 2945 CGAGCTAG 2952
||||||||
Sbjct 3242 CGAGCTAG 3249
> AT5G56250.2 | Symbols: HAP8 | hapless 8 | chr5:22768577-22772892
REVERSE LENGTH=2985
Length=2985
Score = 230 bits (124), Expect = 8e-59
Identities = 252/311 (81%), Gaps = 20/311 (6%)
Strand=Plus/Plus
Query 557 CTTCTGAATCAATAATGGCTTCAAAAACATGTCCTATTTGCAAAACCTTCTCCTCAGCTT 616
||||||| || | ||||||| | ||| ||||| || |||||||||||||| || ||||
Sbjct 714 CTTCTGATTC--T-ATGGCTTTGAGAACTTGTCCCATCTGCAAAACCTTCTCGTCTGCTT 770
Query 617 CTAACACAACTTTGAATGCTCACATCGACCAGTGTTTGTCTGTTGACTCAGCACTGCCAC 676
||||||| ||||| ||||| ||||| || |||||| ||||||||||||| | | ||
Sbjct 771 CTAACACTACTTTAAATGCGCACATTGATCAGTGTCTGTCTGTTGACTC-G---GGGCAG 826
Query 677 CGGTTGTTAGTAGTAAGCCAAACAAGCCT-AGAAGTAAGCCACGGGTGAAAGTTAAAACG 735
| | | | | |||||||||||| |||| || | |||||||||| |||||||||||||
Sbjct 827 CAGCCG--ATTCGTAAGCCAAACAGGCCTAAG-ACTAAGCCACGGTTGAAAGTTAAAACC 883
Query 736 ATGGTTGATATCTACGCTTCTGCGAAAGAAGGCACATTAGAAGATCTTGATAAAAGAAAT 795
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 ATGACTGATATCTATGCTTCTGCGAAAGAAGGCACATTAGAAGATCTTGATAAAAGAAAT 943
Query 796 GGAACAAAGTGGG-TGTCGATTTTGAGTTA-TACAAATAGAGTTGT-TGCTGA-GA-A-G 849
|| |||||||||| | | ||||| ||| || | | || | ||||| | |||| || | |
Sbjct 944 GGCACAAAGTGGGCTAT-GATTTCGAGCTACT-CTAACCGTGTTGTCT-CTGATGATAAG 1000
Query 850 TCTGAAGTGTC 860
||||||||||
Sbjct 1001 CCTGAAGTGTC 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146738308275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5