BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333237
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 213 6e-55
> AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24113462-24114449 FORWARD LENGTH=474
Length=474
Score = 213 bits (115), Expect = 6e-55
Identities = 136/146 (93%), Gaps = 1/146 (1%)
Strand=Plus/Plus
Query 104 AAGGTTTCGGATTCATTACTTTCGAGTCTGAGGATGATGCACAAAACGCTTTGAAAGCTT 163
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 320 AAGGTTTCGGATTCATAACTTTTGAGTCTGAGGATGATGCACAAAAGGCTTTGAAAGCTT 379
Query 164 TGAATGGGAAGATTGTTAAGGGCAGATTAATATTTGTGGAAGCTGCAAAGGAAGTAGAAG 223
||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 380 TGAATGGGAAGATTGTTAATGGCAGACTAATATTTGTGGAAACTGCAAAGGAAGTAGAAG 439
Query 224 CACCAATAACAATTATGAAAAAGTAA 249
|||||| ||||| | |||||| ||||
Sbjct 440 CACCAACAACAAGTCTGAAAA-GTAA 464
Score = 100 bits (54), Expect = 5e-21
Identities = 54/54 (100%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 38 GACTCTCTGCTTACACCACAGATCAATCACTGAGGCAACTGTTTGCGCCTTTTG 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GACTCTCTGCTTACACCACAGATCAATCACTGAGGCAACTGTTTGCGCCTTTTG 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11310243525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5