BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333262
Length=393
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34600.1 | Symbols: JAZ7, TIFY5B | jasmonate-zim-domain prot... 549 7e-156
> AT2G34600.1 | Symbols: JAZ7, TIFY5B | jasmonate-zim-domain protein
7 | chr2:14573080-14573856 FORWARD LENGTH=677
Length=677
Score = 549 bits (297), Expect = 7e-156
Identities = 356/384 (93%), Gaps = 5/384 (1%)
Strand=Plus/Plus
Query 1 ATGGAGATGCAAACAAAATGCGACTTGGAACTTCGCCTTCTTACTTCTTCATATGCTTCT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 144 ATGGAGATGCAAACAAAATGCGACTTGGAACTTCGCCTTCTTACTTCTTCTTATGATTCT 203
Query 61 TCTGATTTCCATAGCTCGGTGGACAAATCAAGCAGCTCTGAAATTTCACAACCAAAGCAT 120
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 204 ---GATTTCCATAGCTCGTTGGACGAATCAAGCAGCTCTGAAATTTCACAACCAAAGCAA 260
Query 121 GAATCTCAGATATTAACCATCTTCTACAACGGGCACATGTGTGTTTCTTCAGATCTTACC 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 261 GAATCTCAGATATTAACCATTTTCTACAACGGGCACATGTGTGTTTCTTCAGATCTTACC 320
Query 181 CACCTTGAGGCTAAAGCTATACTATCGCTAGCGAGTAGAGATGTGGAAGAGAGATCGTTA 240
|| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 321 CATCTTGAGGCTAACGCTATACTATCGCTAGCGAGTAGAGATGTGGAAGAGAAATCTTTA 380
Query 241 TCGTTGAAAAGCTCAGACGATTCGGAACCTCCAACACTCCCAAA-ATATTCGACCCGATT 299
|| |||| ||| ||||||| |||||| ||||||||| ||||||| | ||||||| |||||
Sbjct 381 TCCTTGAGAAGTTCAGACGGTTCGGATCCTCCAACAATCCCAAACA-ATTCGACTCGATT 439
Query 300 TCATAATCAAAAGGTCTCTATGAAGAGATCTCTTCGGAGTTTTCTTCAGAAACGAAATGT 359
|||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 440 TCATTATCAAAAGGCCTCTATGAAGAGATCTCTTCACAGTTTTCTTCAGAAACGAAGTCT 499
Query 360 TCGGATTCAAGCAACTTCCCCTTA 383
||||||||||||||||||||||||
Sbjct 500 TCGGATTCAAGCAACTTCCCCTTA 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18548799381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5