BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333266
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20030.1 | Symbols: | F-box and associated interaction doma... 455 4e-127
AT5G60560.1 | Symbols: | F-box and associated interaction doma... 372 4e-102
AT4G05080.1 | Symbols: | F-box and associated interaction doma... 200 2e-50
AT3G19880.1 | Symbols: | F-box and associated interaction doma... 178 1e-43
> AT3G20030.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6990254-6991462 FORWARD LENGTH=1209
Length=1209
Score = 455 bits (246), Expect = 4e-127
Identities = 298/322 (93%), Gaps = 8/322 (2%)
Strand=Plus/Plus
Query 390 CAGCTATGCTATCGGATACGACAATAACCG-AAATCACAAAATCTTGAGGTTTGTGGATT 448
||| |||||||||||||||||||||||||| ||| |||||||||||||||||| |||| |
Sbjct 429 CAGGTATGCTATCGGATACGACAATAACCGTAAA-CACAAAATCTTGAGGTTTCTGGAAT 487
Query 449 TTTACGACTCTAA-AGTTAAGCACAAATTTCTCGAGTACGAAATATACGATTTTAGCTCT 507
|||| ||| ||| | | ||||||| |||||| ||||||||||| |||||||||||||||
Sbjct 488 ATTACAACTTTAACA-TGAAGCACAGATTTCTTGAGTACGAAATCTACGATTTTAGCTCT 546
Query 508 AATTCATGGAGGGTTCTTGATATCACT-CCCGATTGGGAAATAGAGTCTTATCAACGTGG 566
|||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct 547 AATTCATGGAGGGTTCTTGATATCGCTCCCCG-TTGGGAAATAGAGTCTTATCAACGTGG 605
Query 567 TGCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAAAAAATA-ATATTCGAAGAGG 625
||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct 606 AGCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAAAAAATAGA-ATACGAAGAGG 664
Query 626 ATGGAGAGTATCCAGAGCCGCCAGATTATTTACTCTGTTTTGATTTTACGACGGAGAGCT 685
||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 665 ATGGAGAGTTTCCAGAGCCGGCAGATAATTTACTCTGTTTTGATTTTACGACGGAGAGCT 724
Query 686 TTGGACAGTTTCTTCCTCTGCC 707
||||||||||||||||||||||
Sbjct 725 TTGGACAGTTTCTTCCTCTGCC 746
Score = 302 bits (163), Expect = 6e-81
Identities = 218/245 (89%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 751 GAGCCCAATGCAGTGTCGTGGAATCCTTTTTTAAAAGTTGATATGAAACCACATTGTAGT 810
||| ||||| ||||||| ||||||||||| ||||||||||||||| ||||||| | ||
Sbjct 871 GAGACCAATACAGTGTCATGGAATCCTTTCTTAAAAGTTGATATGGAACCACACTACGGT 930
Query 811 TTTGGTTTTCAT-TTTCACTATGACGGTGGCAGTTTCTTCATTGACGAGGAGGAGAAAGT 869
| ||||| || ||| ||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 931 CGTAGTTTT-ATGTTTGACTATTACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAACT 989
Query 870 CGGTGTTGTTATTCATTTTGACGCATCTGAAATGACCCGCTACGAGGACGCAGCTTACAT 929
|| ||||||| |||| ||||||| ||||| |||||||||||||||||||||| |||||||
Sbjct 990 CGCTGTTGTTTTTCAGTTTGACGAATCTGGAATGACCCGCTACGAGGACGCAACTTACAT 1049
Query 930 CATTGGAAAGAATGGGTACGTTAAAAAAGTGCGTCTAGGAGAAGCTCCTGCGAATCAAGG 989
||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1050 CATTGGAGAGAATGGCTACGTTAAAAAAGTGCGTCTTGGAGAAGCTCCTGCGAATCAAGG 1109
Query 990 AGGAT 994
|||||
Sbjct 1110 AGGAT 1114
> AT5G60560.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:24345949-24347172 FORWARD LENGTH=1125
Length=1125
Score = 372 bits (201), Expect = 4e-102
Identities = 323/381 (85%), Gaps = 11/381 (3%)
Strand=Plus/Plus
Query 16 GATC-TTCCAAGGAATTTGGTAG-GGAAGATATTGTCTATGGTTCCGATAACTTGTCTTG 73
|||| ||| ||| ||||||||| || ||||||||| || |||| ||||||||| ||| |
Sbjct 16 GATCTTTCGGAGG-ATTTGGTAGAGG-AGATATTGTGTAGGGTTTCGATAACTTCTCTAG 73
Query 74 GAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAAAGTTCGGATTCTATGTA 133
|||| ||||||| ||| |||||||||||| | | |||||||||| | || |||||||||
Sbjct 74 GAGCAGTGAGATCCACGTGCAAAGGATGGTATGTTTTATCCAAAACTAGGGTTCTATGTA 133
Query 134 AAGCCGAAACAAGGCATCAGTTTGTGGGGTTCATGATGAAGAAGTATAAGCTTTGTTCAC 193
|||| ||||||| |||||||||| | |||||||||| |||||| ||||||||||| | |
Sbjct 134 AAGCAGAAACAAAGCATCAGTTTCTAGGGTTCATGAAGAAGAATTATAAGCTTTG--CTC 191
Query 194 AAACT-TTGTTCAATCTTCATGGAACCTTCAACGAAGAAGGAGCT-AACGAATTCGTGTA 251
|| | ||| |||| ||||||| ||||||||||||||||| | || |||||| || |
Sbjct 192 -AA-TGAGGTTTGATCTCCATGGAAACTTCAACGAAGAAGGAGGTGAA-GAATTCATGAA 248
Query 252 TCCATCTATAAAGGAGTTAGGTAATTTATTTAATCAAGTCAAGATATCTAGAGTTTTTCA 311
|||||| |||||| ||| |||||||||| || ||||| | | |||| || |||||||||
Sbjct 249 TCCATCAATAAAGAAGTCAGGTAATTTACTTGATCAACTTGATATATGTAAAGTTTTTCA 308
Query 312 ATGCGACGGGTTATTGTTATGCATGACCAAAGAGGACAACACTAGGCTCGTGGTATGGAA 371
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 309 ATGCGACGGGTTATTGTTATGCGTGACCAAAGAGGAAAACACTAGGCTCGTGGTATGGAA 368
Query 372 CCCTTATTTGGGTCAAATCAG 392
|||||||| ||||||||||||
Sbjct 369 CCCTTATTCGGGTCAAATCAG 389
Score = 217 bits (117), Expect = 2e-55
Identities = 177/204 (87%), Gaps = 11/204 (5%)
Strand=Plus/Plus
Query 751 GAGCCCAATGCAGTGTCGTGGAAT-CCTTTTTTAAAAGTTGATATGAAACCACATTGTAG 809
||| ||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||
Sbjct 844 GAGGCCAATGCAGTGTCGTGG-ATCCCTTTCTTAAAAGTTGATATGAAACCACACTGTAG 902
Query 810 TTTTGGTTTTCATTTTCACTATGACGGTGGCAGTTTCTTCATTGACGAGGAGGAGAAAGT 869
|||| |||||| ||| | || ||||||||||||||||||||||||||||||| |||||||
Sbjct 903 TTTTCGTTTTCGTTTGCCCTTTGACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAAGT 962
Query 870 CGGTGTTGTTATTCATTTTGA------CGC--A-TCTGAAATGACCCGCTACGAGGACGC 920
|| || ||||||||| |||| ||| | |||||||||| ||||||||||||||
Sbjct 963 CGCCGTGGTTATTCATGTTGATGTTGTCGCCGAATCTGAAATGAACCGCTACGAGGACGT 1022
Query 921 AGCTTACATCATTGGAAAGAATGG 944
|||||||||||||||| |||||||
Sbjct 1023 AGCTTACATCATTGGAGAGAATGG 1046
> AT4G05080.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:2603001-2604176 FORWARD LENGTH=1176
Length=1176
Score = 200 bits (108), Expect = 2e-50
Identities = 318/411 (77%), Gaps = 47/411 (11%)
Strand=Plus/Plus
Query 1 ATGACGACGAT-CTCTGATCTT-C-CAAGGAATTTGGTAGGGA-AGATATTGTCTATGGT 56
||||||| ||| || |||||| | | ||| ||||||| | | |||||||||||| |||
Sbjct 1 ATGACGATGATGTTC-GATCTTACGC-AGG-ATTTGGT-GAAAGAGATATTGTCTAGGGT 56
Query 57 TCCGATAACTTGTCTTGGAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAA 116
||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 57 TCCGATAACTTCCCTAGGAGCAGTGAGATCCACTTGCAAAGGATGGAACGCTTTATCCAA 116
Query 117 AGTTCGGATTCTATGTAAAGCCGAAAC-AAGGCATCAGTTTG-TG--GGGTTCATGATGA 172
|| |||||||||||||||||| |||| || || |||||| | ||||||||| ||
Sbjct 117 AGATCGGATTCTATGTAAAGCA-AAACCAAAACAGCAGTTTCATCAAGGGTTCATGCTGT 175
Query 173 A-GAAGTATAAGCTTTGTTCACAAACTTTG-TTCAATCT-TCATGGAACCTTCAACGAAG 229
|| |||| |||| ||||| | | | |||||| | || |||||||||||| |||
Sbjct 176 CTGAT-TATAGGCTTCGTTCA-A---TGAGGTTCAATATCTC-TGGAACCTTCAAGGAA- 228
Query 230 AA-GGAGCTAACGAATTCGTGTATCC-ATCTA-TAAAGGAG-TTAGGTAATTTAT-TTAA 284
|| || | || |||||||| || | ||| | |||||||| || |||||||| | ||||
Sbjct 229 AATGGTG--AA-GAATTCGT-TAACTTATC-AGTAAAGGAGATT-GGTAATTT-TCTTAA 281
Query 285 TCAAGTCAAGATATCT-AGA-GTTTTTCAATGCGACGGGT-TATTGTTATGCATGACCAA 341
| |||| |||||||| | | || || | |||| ||| | |||||||||| | ||||
Sbjct 282 TAAAGTTGAGATATCTCATATGTATTAC--TGCGGCGG-TATATTGTTATGTGTCACCAC 338
Query 342 AGAGGACAACACTAGGCTCGTGGTATGGAACCCTTATTTGGGTCAAATCAG 392
| | | | | |||||||||| | |||||||| |||||||| ||||||||
Sbjct 339 -G-G-ATA-C--TAGGCTCGTGATTTGGAACCCGTATTTGGGGCAAATCAG 383
> AT3G19880.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6911435-6912604 REVERSE LENGTH=1170
Length=1170
Score = 178 bits (96), Expect = 1e-43
Identities = 191/235 (81%), Gaps = 13/235 (6%)
Strand=Plus/Plus
Query 1 ATGACGACGATCTCTGATCTT-C-CAAGGAATTTGGTAG-GGAAGATATTGTCTATGGTT 57
||||||| ||| ||||||| | | ||| ||||||||| || ||||| |||||| ||||
Sbjct 1 ATGACGATGATGAGTGATCTTACGC-AGG-ATTTGGTAGAGG-AGATACTGTCTAGGGTT 57
Query 58 CCGATAACTTGTCTTGGAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAAA 117
|||||||||| ||| ||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 58 CCGATAACTTCTCTAGGAGCAGTGAGATCCACCTGCAAAGGATGGAACGCTTTATCCAAA 117
Query 118 GTTCGGATTCTATGTAAAGCCGAAACAAGGCATCAGTTTGTGGGGTTCATGATGAAGAAG 177
| ||||||||||||| || ||| ||| || |||||| | |||||||||||| | |
Sbjct 118 GAACGGATTCTATGTATAGGAGAACCAAAACAGCAGTTTCTAGGGTTCATGATGTTGGAT 177
Query 178 TATAAGCTTTGTTCACAAACTTTG-TTCAATCTTCATGGAA-CCTTCAACGAAGA 230
|||| |||||| ||| | | | ||||||||||| |||| ||| |||||||||
Sbjct 178 TATAGGCTTTGCTCA-A---TGAGGTTCAATCTTCACGGAATCCT-CAACGAAGA 227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5