BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333274
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30900.1 | Symbols: TBL43 | TRICHOME BIREFRINGENCE-LIKE 43 |... 1657 0.0
> AT2G30900.1 | Symbols: TBL43 | TRICHOME BIREFRINGENCE-LIKE 43
| chr2:13149414-13152542 FORWARD LENGTH=1707
Length=1707
Score = 1657 bits (897), Expect = 0.0
Identities = 1045/1114 (94%), Gaps = 20/1114 (2%)
Strand=Plus/Plus
Query 1 ATGATGAGAGGTGCTGCTTCGACCGGAGTAGTAAT-GGTCATGGTTATAATGATACTTGT 59
|||||||||||||||||| | ||||||||||| || |||||||||| |||||||||||||
Sbjct 476 ATGATGAGAGGTGCTGCTCCCACCGGAGTAGT-ATCGGTCATGGTTTTAATGATACTTGT 534
Query 60 GTTGTTAAACCAAACAGAGAGTGCTAGTGTGAATGGTTCATC---A---CAATCACATAG 113
||||||||| |||| |||||||||||||| |||||||||||| | | | ||| |||
Sbjct 535 GTTGTTAAAACAAATAGAGAGTGCTAGTGCGAATGGTTCATCATTAGGGCTACCACCTAG 594
Query 114 AAAGTTTTGTAATATTTATTTAGGAAGTTGGGTCTATGATAAATCTTACCCTCTCTATGA 173
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 595 AAAGTTTTGTAATATTTATCAAGGAAGTTGGGTCTATGACAAATCTTACCCTCTCTATGA 654
Query 174 TTCCAAGACTTGTCCTTTCATCGAGAGACAATTTAACTGCAAGTCCAATGGTCGCCCTGA 233
|||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 655 TTCCAAGAATTGCCCTTTCATCGAGAGACAGTTTAACTGCAAGTCCAATGGTCGCCCTGA 714
Query 234 CAAAGAGTACCTCAAGTATCGGTGGCAACCTTCCGGTTGCAATCTCCCCAGATTCAACGG 293
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 715 CAGCGAGTACCTCAAGTATCGATGGCAACCTTCCGGTTGCAATCTCCCCAGATTCAACGG 774
Query 294 CTTAGATTTTCTTGGAAGGATAATGAAAGGGAAGAAACTGATGTTCGTCGGAGATTCACT 353
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 775 CTTAGATTTTCTGGGAAGGATAATGAAAGGGAAGAAACTGATGTTCGTAGGAGATTCACT 834
Query 354 GAGTCTAAACCAATGGCAATCTCTCACGTGTTTGCTCCACAACGTTGCACCAAACGTCAA 413
|||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 835 GAGTCTAAACCAATGGCAATCTCTCACGTGTTTGCTCCACAACGCCGCACCAAAAGCCAA 894
Query 414 TTCCACCCT-CACACGTTCCCCTTCTGGCCTCTCTGTCTTCTCATTCCCCGCTTACAATT 472
||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 895 TTCCA-CATCCACACGTTCCCCTTCTGGCCTCTCCGTCTTCTCATTCCCCGCTTACAATT 953
Query 473 CTTCGATTATGTTTTCAAGAAACGCGTTTCTGGTGGATATAGTCGGAGCCCCACCTAAGC 532
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 954 CTTCGATTATGTTTTCAAGAAACGCGTTTCTTGTGGATATAGTCGGAGCCCCACCGAAGC 1013
Query 533 GAGTGATGAAGCTCGACTCCATCTCGAGTGGTTCGTTGTGGAAAACCGCAGATGTTTTGG 592
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1014 GAGTGATGAAGCTTGACTCAATCTCGAGTGGTTCGTTGTGGAAAACCGCAGACGTTTTGG 1073
Query 593 TCTTCAACTCTTGGCATTGGTGGCTTCACACCGGCAGAAAACAACCATGGGACGCAATTA 652
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 1074 TCTTCAACTCTTGGCATTGGTGGCTTCACACAGACCGAAAACAACCATGGGACGCAATTA 1133
Query 653 TGTCCGGGAATGTAACGGTTAAAGACATGGACCGGTTAGTGGCATATGAGAAAGCAATGA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TGTCCGGGAATGTAACGGTTAAAGACATGGACCGGTTAGTGGCATATGAGAAAGCAATGA 1193
Query 713 TGACTTGGGCTAAGTGGATTGATCAGAACATTGATCCTTCCAAAACCAAAGTCTTCTTCC 772
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1194 TGACTTGGGCTAAGTGGATTGATCAAAATATTGATCCTTCCAAAACCAAAGTCTTCTTCC 1253
Query 773 AGGGTGTTTCTCCGGACCATGGCCGCGCAAGCGAATGGTCGAAACAAGGTGGCAAAGGCA 832
| ||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1254 AAGGTATTTCTCCGGACCATGGCCGGGCAAGGGAATGGTCGAAACAAGGTGGCAAAGGCA 1313
Query 833 GTTGCATTGGAGAAACAAAGCCGATTATGGGATCGAAGT-AC-TGGGC-GGGACCACAC- 888
||||||| |||||||||||||||||||||||||||| || || ||| | ||| || |||
Sbjct 1314 GTTGCATAGGAGAAACAAAGCCGATTATGGGATCGA-GTTACCTGG-CTGGG-CCGCACG 1370
Query 889 CGAGCGGAGATGGTGGTGGCGAAAGTGATAAAGACGATGAAGAATCCGGCGCGGTTAATG 948
| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1371 C-AGCCGAGATGGTGGTGGCGAAAGTGATAAAGACGATGAAGAATCAGGCGCGGTTAATG 1429
Query 949 GATGTGACATTAATGTCTCAGCTAAGGAAAGATGGACATCCTTCAGTATACGGGTTTGGC 1008
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1430 GATGTGACATTGATGTCTCAGCTAAGGAAAGATGGACATCCTTCAGTATACGGTTTTGGC 1489
Query 1009 GGTCACAAGA-TGCCGGATTGTAGCCATTGGTGTCTCTCTGGAGTCCCGGATAGCTGGAA 1067
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 GGTCACA-GAATGGCGGATTGTAGCCATTGGTGTCTCTCTGGAGTCCCGGATAGCTGGAA 1548
Query 1068 CCAACTCTTGTATTCTGAGTTGTTTCATTCTTAA 1101
||| ||||||||||||||| ||||||||||||||
Sbjct 1549 CCAGCTCTTGTATTCTGAGCTGTTTCATTCTTAA 1582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5