BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg333289 Length=675 Score E Sequences producing significant alignments: (Bits) Value AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2... 357 8e-98 AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:2... 126 2e-28 AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2... 121 1e-26 > AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2763256-2765351 REVERSE LENGTH=915 Length=915 Score = 357 bits (193), Expect = 8e-98 Identities = 402/499 (81%), Gaps = 30/499 (6%) Strand=Plus/Plus Query 11 AAGAGCCAAGAAACTGGGCGGATCTTCCGTCGGAGTTGACGTCTTTGATCCTGATCCGTC 70 |||||| ||||||||||| |||||||||| ||||| ||||| ||| ||||||| | |||| Sbjct 122 AAGAGCGAAGAAACTGGGTGGATCTTCCGCCGGAGCTGACGACTTCGATCCTGCTGCGTC 181 Query 71 TTAGCGTGGCTGATATTCTGGACAACGCTCAGAAGGTGTGCAGACCGTGGCGACGCGTCT 130 ||||| || ||||||| ||||||||||||||||||||||| | | |||||||||| | | Sbjct 182 TTAGCCTGACTGATATACTGGACAACGCTCAGAAGGTGTGTAAAGAGTGGCGACGCATTT 241 Query 131 GTAAAGAACCTTCGATGTGGCGGAAAATCGACATGAGAAGCCTG-ATCAGAGATAGGGGA 189 ||||||| ||||||||||||||||||||| ||| | | || ||| ||| | || | Sbjct 242 GTAAAGACCCTTCGATGTGGCGGAAAATCAACACGCG-AGACTGCCTCA-TG-TA---CA 295 Query 190 ATGC-TCGACCCCTTAGCT-ATCATGTGCCGTCACGCCGTGGATCGCAGCGAGGGTGGTT 247 | | | || || | | | ||||||||||||| || |||| |||| ||||||| | Sbjct 296 A--CTTTGA---TTTCG-TGAGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGCT 349 Query 248 TGGTCA-AAATCCACCTTG--GGA-ACTTCGTCAACGATGATCTTCTCGA-CTACATCGC 302 || | | | ||| || ||| | | ||||| | | |||| ||| ||| | |||||| Sbjct 350 TGCT-AGAGATCAACGTTGATGAACACTTCTTGAGCGATTCTCTCCTC-AGCTACAT--- 404 Query 303 TGATAGATCAAGGAATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAGGGTGACGAG 362 | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 405 T-ACCGAT--AGGAATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAGGGTGACGAA 461 Query 363 GCCAGGACTTGTGAATGCAATCACAAAACTTCCATTACTTGAAACCCTCGAGGTCTCACA 422 | |||| ||||||| ||||| ||||| ||||||| |||||||||||||||||| | || Sbjct 462 ACTAGGAGTTGTGAACGCAATTGCAAAAATTCCATTGCTTGAAACCCTCGAGGTCACTCA 521 Query 423 CTCATGTTTAAACCTG-AGTTTGGAAGATATAGGCCACGCTTGCCCACAGCTAAAGACAT 481 ||||||| |||| ||| | ||| ||| |||||||||||||||||||||||||||||||| Sbjct 522 CTCATGTATAAAACTGGA-TTTAAAAGCTATAGGCCACGCTTGCCCACAGCTAAAGACAT 580 Query 482 TGAAGTTAAACTCCTCAGG 500 ||||| ||||||||| ||| Sbjct 581 TGAAGCTAAACTCCTTAGG 599 > AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:21296833-21297858 REVERSE LENGTH=907 Length=907 Score = 126 bits (68), Expect = 2e-28 Identities = 436/606 (72%), Gaps = 55/606 (9%) Strand=Plus/Plus Query 67 CGTCTTAGCGTGGCTGATATTCTGGACAACGCTCAGAAGGTGTGCAGACCGTGGCGACGC 126 |||||||||||| |||| || ||||| ||||||||||| ||||| ||| |||| ||| Sbjct 1 CGTCTTAGCGTGACTGAGATACTGGAGAACGCTCAGAAAGTGTGTAGATCGTGACGATAT 60 Query 127 GTCTGTAAAGAACCTTCGATGTGGCGGAAAATCGACATGAGAAGCCTGA--T-CAGAGAT 183 || |||||||| || || || ||||| |||||||||||| ||| | ||| | || | | Sbjct 61 GTTTGTAAAGACCCATCCATATGGCGTAAAATCGACATGCGAATCTTGAGTTACA-ACAA 119 Query 184 A-GGGGAATGCTCG-AC--CCCTTA-GCTATCATGTGCCGTCACGCCGTGGATCGCAGCG 238 | | | || | | || ||| | || || |||| ||| ||||||| ||||| |||| Sbjct 120 ACCAGTACTGGT-GAACAATCCTGAGGCGAT-ATGT--CGTAACGCCGTTGATCGTAGCG 175 Query 239 AGGGTGGTTTGGTCAAAATCCACCTTGGGAACTTCGTCAACGATGATCTTCTCGAC-TAC 297 ||||||| ||| | | ||| || ||||| |||||| | ||| ||| || || ||| Sbjct 176 AGGGTGGCTTGCTGGAGATCAACATTGGGGACTTCGGGAGTGATTCTCTCCT-TACATAC 234 Query 298 ATCGCTGATAGATCAAGGAATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAG-GGT 356 ||||| || || ||||| ||||| ||||| ||| ||| | ||||||| | | || | Sbjct 235 ATCGCGGAGAGGTCAAGTAATCTTAGAAGCCTTAGAC-T--AATGTGC--T-C-AGAAAT 287 Query 357 GACGAGGCCA-GGACTTG-TGAATGCAATCACAAAACTTCCATTACTTGAA-ACCCTCGA 413 || || | | ||| ||| | || ||| | ||||||||| | |||||| | || || Sbjct 288 AAC-AGACGATGGATTTGTTCAA-GCAGTTGTGAAACTTCCAATGCTTGAAGA-GCTTGA 344 Query 414 GGTCTCA--CA-CTCATGTTTAAACCTGAGT-T-TGGAAGATATAGGCCACG-CTTGCCC 467 ||| ||| | |||| | | | |||| | || || | ||| | | |||| || Sbjct 345 GGTTTCAGGAATATCAT-TGT-CAGGAGAGTCTATGAAACTTGCAGGGC-TGTCTTGTCC 401 Query 468 ACAGCTAAAGACATTGAAGTTAAA-CTCCTCAGGGGGTTT-CTGGAACTCTCGCAATGAT 525 | | || |||||||||| | |||| | |||| ||| || || | ||| ||||| Sbjct 402 AAATCTGAAGACATTGATGCTAAACCGCCTC-----TTTTACT-TAAGT-TCG-GATGAT 453 Query 526 GATGAT--T-ATGCCCTATAAATCGCTA-AAAGCATGCC-AGAACTACGCCACCTCCACC 580 |||||| | ||||| || ||| || | |||||||||| | |||||||||| ||||| | Sbjct 454 GATGATCATGATGCCATAGCAATTGC-AGAAAGCATGCCTA-AACTACGCCATCTCCAGC 511 Query 581 TTTATGCGAATAACCTAAGTGACACACGCTTGAATGCCATTCTTGACGGTTGTCCTCACC 640 ||| || ||| || |||| | ||| |||| || ||||||||||||||||||||||||| Sbjct 512 TTTGTGGGAACAAACTAACCAAAACAGGCTTAAACGCCATTCTTGACGGTTGTCCTCACC 571 Query 641 TGGAAC 646 |||||| Sbjct 572 TGGAAC 577 > AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2765962-2767957 REVERSE LENGTH=930 Length=930 Score = 121 bits (65), Expect = 1e-26 Identities = 114/136 (84%), Gaps = 10/136 (7%) Strand=Plus/Plus Query 514 TCTCGCAATGATGATGATTATGCCCTATAAATCGCTAAAAGCATG-CCAGAACTACGCCA 572 ||||| |||| ||||||| |||| ||| ||||||| |||||||| ||| |||||||||| Sbjct 627 TCTCG-AATG-TGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCCA-AACTACGCCA 683 Query 573 CCTCCACCTTTATGCGAATAAC---CTAAGTGACACACGCTTGAATGCCATTCTTGACGG 629 |||||| | ||||| | |||| |||| |||| |||||||||||||||||||||| Sbjct 684 CCTCCAGC-TTATG-G-GTAACGGACTAACCAACACTGGCTTGAATGCCATTCTTGACGG 740 Query 630 TTGTCCTCACCTGGAA 645 |||||||||||||||| Sbjct 741 TTGTCCTCACCTGGAA 756 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32652195550 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5