BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333289
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2... 357 8e-98
AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:2... 126 2e-28
AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2... 121 1e-26
> AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2763256-2765351
REVERSE LENGTH=915
Length=915
Score = 357 bits (193), Expect = 8e-98
Identities = 402/499 (81%), Gaps = 30/499 (6%)
Strand=Plus/Plus
Query 11 AAGAGCCAAGAAACTGGGCGGATCTTCCGTCGGAGTTGACGTCTTTGATCCTGATCCGTC 70
|||||| ||||||||||| |||||||||| ||||| ||||| ||| ||||||| | ||||
Sbjct 122 AAGAGCGAAGAAACTGGGTGGATCTTCCGCCGGAGCTGACGACTTCGATCCTGCTGCGTC 181
Query 71 TTAGCGTGGCTGATATTCTGGACAACGCTCAGAAGGTGTGCAGACCGTGGCGACGCGTCT 130
||||| || ||||||| ||||||||||||||||||||||| | | |||||||||| | |
Sbjct 182 TTAGCCTGACTGATATACTGGACAACGCTCAGAAGGTGTGTAAAGAGTGGCGACGCATTT 241
Query 131 GTAAAGAACCTTCGATGTGGCGGAAAATCGACATGAGAAGCCTG-ATCAGAGATAGGGGA 189
||||||| ||||||||||||||||||||| ||| | | || ||| ||| | || |
Sbjct 242 GTAAAGACCCTTCGATGTGGCGGAAAATCAACACGCG-AGACTGCCTCA-TG-TA---CA 295
Query 190 ATGC-TCGACCCCTTAGCT-ATCATGTGCCGTCACGCCGTGGATCGCAGCGAGGGTGGTT 247
| | | || || | | | ||||||||||||| || |||| |||| ||||||| |
Sbjct 296 A--CTTTGA---TTTCG-TGAGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGCT 349
Query 248 TGGTCA-AAATCCACCTTG--GGA-ACTTCGTCAACGATGATCTTCTCGA-CTACATCGC 302
|| | | | ||| || ||| | | ||||| | | |||| ||| ||| | ||||||
Sbjct 350 TGCT-AGAGATCAACGTTGATGAACACTTCTTGAGCGATTCTCTCCTC-AGCTACAT--- 404
Query 303 TGATAGATCAAGGAATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAGGGTGACGAG 362
| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 T-ACCGAT--AGGAATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAGGGTGACGAA 461
Query 363 GCCAGGACTTGTGAATGCAATCACAAAACTTCCATTACTTGAAACCCTCGAGGTCTCACA 422
| |||| ||||||| ||||| ||||| ||||||| |||||||||||||||||| | ||
Sbjct 462 ACTAGGAGTTGTGAACGCAATTGCAAAAATTCCATTGCTTGAAACCCTCGAGGTCACTCA 521
Query 423 CTCATGTTTAAACCTG-AGTTTGGAAGATATAGGCCACGCTTGCCCACAGCTAAAGACAT 481
||||||| |||| ||| | ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 522 CTCATGTATAAAACTGGA-TTTAAAAGCTATAGGCCACGCTTGCCCACAGCTAAAGACAT 580
Query 482 TGAAGTTAAACTCCTCAGG 500
||||| ||||||||| |||
Sbjct 581 TGAAGCTAAACTCCTTAGG 599
> AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:21296833-21297858
REVERSE LENGTH=907
Length=907
Score = 126 bits (68), Expect = 2e-28
Identities = 436/606 (72%), Gaps = 55/606 (9%)
Strand=Plus/Plus
Query 67 CGTCTTAGCGTGGCTGATATTCTGGACAACGCTCAGAAGGTGTGCAGACCGTGGCGACGC 126
|||||||||||| |||| || ||||| ||||||||||| ||||| ||| |||| |||
Sbjct 1 CGTCTTAGCGTGACTGAGATACTGGAGAACGCTCAGAAAGTGTGTAGATCGTGACGATAT 60
Query 127 GTCTGTAAAGAACCTTCGATGTGGCGGAAAATCGACATGAGAAGCCTGA--T-CAGAGAT 183
|| |||||||| || || || ||||| |||||||||||| ||| | ||| | || | |
Sbjct 61 GTTTGTAAAGACCCATCCATATGGCGTAAAATCGACATGCGAATCTTGAGTTACA-ACAA 119
Query 184 A-GGGGAATGCTCG-AC--CCCTTA-GCTATCATGTGCCGTCACGCCGTGGATCGCAGCG 238
| | | || | | || ||| | || || |||| ||| ||||||| ||||| ||||
Sbjct 120 ACCAGTACTGGT-GAACAATCCTGAGGCGAT-ATGT--CGTAACGCCGTTGATCGTAGCG 175
Query 239 AGGGTGGTTTGGTCAAAATCCACCTTGGGAACTTCGTCAACGATGATCTTCTCGAC-TAC 297
||||||| ||| | | ||| || ||||| |||||| | ||| ||| || || |||
Sbjct 176 AGGGTGGCTTGCTGGAGATCAACATTGGGGACTTCGGGAGTGATTCTCTCCT-TACATAC 234
Query 298 ATCGCTGATAGATCAAGGAATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAG-GGT 356
||||| || || ||||| ||||| ||||| ||| ||| | ||||||| | | || |
Sbjct 235 ATCGCGGAGAGGTCAAGTAATCTTAGAAGCCTTAGAC-T--AATGTGC--T-C-AGAAAT 287
Query 357 GACGAGGCCA-GGACTTG-TGAATGCAATCACAAAACTTCCATTACTTGAA-ACCCTCGA 413
|| || | | ||| ||| | || ||| | ||||||||| | |||||| | || ||
Sbjct 288 AAC-AGACGATGGATTTGTTCAA-GCAGTTGTGAAACTTCCAATGCTTGAAGA-GCTTGA 344
Query 414 GGTCTCA--CA-CTCATGTTTAAACCTGAGT-T-TGGAAGATATAGGCCACG-CTTGCCC 467
||| ||| | |||| | | | |||| | || || | ||| | | |||| ||
Sbjct 345 GGTTTCAGGAATATCAT-TGT-CAGGAGAGTCTATGAAACTTGCAGGGC-TGTCTTGTCC 401
Query 468 ACAGCTAAAGACATTGAAGTTAAA-CTCCTCAGGGGGTTT-CTGGAACTCTCGCAATGAT 525
| | || |||||||||| | |||| | |||| ||| || || | ||| |||||
Sbjct 402 AAATCTGAAGACATTGATGCTAAACCGCCTC-----TTTTACT-TAAGT-TCG-GATGAT 453
Query 526 GATGAT--T-ATGCCCTATAAATCGCTA-AAAGCATGCC-AGAACTACGCCACCTCCACC 580
|||||| | ||||| || ||| || | |||||||||| | |||||||||| ||||| |
Sbjct 454 GATGATCATGATGCCATAGCAATTGC-AGAAAGCATGCCTA-AACTACGCCATCTCCAGC 511
Query 581 TTTATGCGAATAACCTAAGTGACACACGCTTGAATGCCATTCTTGACGGTTGTCCTCACC 640
||| || ||| || |||| | ||| |||| || |||||||||||||||||||||||||
Sbjct 512 TTTGTGGGAACAAACTAACCAAAACAGGCTTAAACGCCATTCTTGACGGTTGTCCTCACC 571
Query 641 TGGAAC 646
||||||
Sbjct 572 TGGAAC 577
> AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2765962-2767957
REVERSE LENGTH=930
Length=930
Score = 121 bits (65), Expect = 1e-26
Identities = 114/136 (84%), Gaps = 10/136 (7%)
Strand=Plus/Plus
Query 514 TCTCGCAATGATGATGATTATGCCCTATAAATCGCTAAAAGCATG-CCAGAACTACGCCA 572
||||| |||| ||||||| |||| ||| ||||||| |||||||| ||| ||||||||||
Sbjct 627 TCTCG-AATG-TGATGATGATGCTCTAGCAATCGCTGAAAGCATGCCCA-AACTACGCCA 683
Query 573 CCTCCACCTTTATGCGAATAAC---CTAAGTGACACACGCTTGAATGCCATTCTTGACGG 629
|||||| | ||||| | |||| |||| |||| ||||||||||||||||||||||
Sbjct 684 CCTCCAGC-TTATG-G-GTAACGGACTAACCAACACTGGCTTGAATGCCATTCTTGACGG 740
Query 630 TTGTCCTCACCTGGAA 645
||||||||||||||||
Sbjct 741 TTGTCCTCACCTGGAA 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5