BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333306
Length=3276
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45230.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 1729 0.0
> AT5G45230.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18302147-18308303 REVERSE LENGTH=3696
Length=3696
Score = 1729 bits (936), Expect = 0.0
Identities = 1988/2477 (80%), Gaps = 148/2477 (6%)
Strand=Plus/Plus
Query 568 GGA-CAACG-CTTGACA-CAATTAGAAGAAAAGTTGGATTTGGATTGCAATGAAAACAAA 624
||| ||||| ||| | | ||| ||| || ||||||| || |||| |||||||| ||| ||
Sbjct 654 GGATCAACGCCTT-A-AGCAACTAGCAGTAAAGTTGAATGTGGAGTGCAATGACAACGAA 711
Query 625 ACCCGCTA-TGTAGGAA-TTGTCGGGATGGCTGGTATCGGCAAAACCTATCTCGCCGATA 682
|| || || ||| ||| | || |||||| | || ||||||||||||||||||||| | |
Sbjct 712 ACTCG-TATTGT-TGAAGTCGTAGGGATGCCCGGAATCGGCAAAACCTATCTCGCCAAGA 769
Query 683 AACTGTTC-CAAAAG-TTGAAGACGAAGATCGGCTGTAACGTGTTCCT-GAAGCTT-GTC 738
|||| ||| | ||| || |||| ||||||| | | |||||| | | || ||
Sbjct 770 AACTCTTCGC-CAAGCTT-AAGAAGAAGATCAACCATTGTGTGTTCATCG-AG-TTCAAG 825
Query 739 CGTGAGAAGACAACCGATG--AGGA-C-CTGTATTTGGAGAAGAGGCTTGTGGAAGGGTT 794
||||||| | || | || | |||| | || | ||||||| ||||||||||| ||
Sbjct 826 CGTGAGATGTCAGCGGA-GCAAGGATCAGAGTGGCTACAGAAGAGACTTGTGGAAGGTTT 884
Query 795 ACTGAATAAAACTATAAATTTCAGTAG-TAAAAATCCACTTGAGGAACGGAAGAATGA-C 852
||| || | | | | ||| || | || |||| ||||||||| ||||| || | |
Sbjct 885 GCTGGAT-ATTC-A-AGATTGCA-CCGATACAAATGCACTTGAGGTTTGGAAGGAT-AGC 939
Query 853 CTAATCCAGAAGAAAGTTGTGGTTGTTTTGGATAATGTGAGTGAC-CAGAA-AGAGAT-C 909
||||| | |||||||| ||| ||||||| ||| ||||||||||| | || ||| || |
Sbjct 940 TTAATCGACAAGAAAGTCGTGATTGTTTTCGATGATGTGAGTGACAAAAAACAGATATCC 999
Query 910 GAGCCGTTTCTAGGG-ATTTGCAACTGGATTAAGGAGGGGAGCATAATCGTCATCACTAC 968
|| || || |||| || ||| ||||||||||| |||||||||| ||||||||||| ||
Sbjct 1000 GAACCACTT-AAGGGTATCTGCGACTGGATTAAGAAGGGGAGCATGATCGTCATCACGAC 1058
Query 969 ACGGGACAAGTCACTG-CTCAAAGGAAT-G-AACTGCGATATCTATGAGGTCCCCAAAAT 1025
||||||||||||| || || | ||| | | ||| ||| | ||||| ||||| |
Sbjct 1059 ACGGGACAAGTCATTGACT-GAGGGATTAGTCACT--GATCTTTATGAAGTCCCTGGGTT 1115
Query 1026 GAACGACAGAGA-GAGCTTAGAGCTCTTTAAAGATCGAGCTCAAGTCTGTAGCAGTACTA 1084
||| || ||||| | |||||||||||||| || | |||||||||||| | ||
Sbjct 1116 GAATGAGAGAGACG-GCTTAGAGCTCTTT--AG---G-GCTCAAGTCTGT-----T-GTA 1162
Query 1085 ATTTTGAAGAAAATTTCATGGAGCTGTCTAAG-AAGTTCGTGGATTATGCGGGAGGGAAC 1143
|| |||||| ||||||||||||||| ||| || ||||| ||||||| ||| |||| |||
Sbjct 1163 ATATTGAAGGAAATTTCATGGAGCTATCT-AGAAAGTTTGTGGATTTTGCACGAGGCAAC 1221
Query 1144 CCATTAGCACTC-AAGAATATTGGTAAGGAGC-TCTACGCGAAAGAAAAGGATCACTGGG 1201
|| ||||| ||| | |||| | |||||||||| || || |||||| ||| ||||||||
Sbjct 1222 CCCTTAGCTCTCGAGGAAT-TCGGTAAGGAGCTTC-GCGGGAAAGACGAGGCTCACTGGG 1279
Query 1202 AAGA-AAGACTTAGAACACTGACACAGTGTTCCAACCCTAA-GGTCAGAGAGAAGTTAAG 1259
|| | ||||||| | |||||| ||||| |||||| || || | ||||||||||| ||||
Sbjct 1280 AA-ACAAGACTTGGGACACTGGCACAGCATTCCAATCC-AACGATCAGAGAGAAGCTAAG 1337
Query 1260 AAGCTCTTATGATGAACTAAACGAGCAGCAGAAGGATGCGTTTCTTGATATAGCCCATTT 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1338 AAGCTCTTATGATGAACTAAACGAGCAGCAGAAGGATGCGTTTCTTGATATAGCTTATTT 1397
Query 1320 CTTCAGATCAGAAGATGTGAAG-TATGTTACAAGTTTACTTGATTCTTTTGACCCTGGAT 1378
||| || ||| |||||| | || || |||| ||||||||||||||||| |||||||| ||
Sbjct 1398 CTTTAGGTCACAAGATGAG-AGCTACGTTAGAAGTTTACTTGATTCTTATGACCCTGAAT 1456
Query 1379 CTGCCGAAGCTGG-GAAGGAACTAATTAAAGGTCTCGTAGACAAGTTCTTGATTAGCGTA 1437
| || ||| |||| || ||| | ||| || |||| |||||| ||||||||| ||||
Sbjct 1457 CCGCGGAATCTGGTCAA-GAA-T--TTAGAGACCTCGCAGACAAATTCTTGATTGGCGTG 1512
Query 1438 TGTGATGGTCGGGTTGAGATGCATAATCTACTCTTAACAATGGCTAAGGAACA-TGTTGG 1496
||||||||||| |||||||||||| ||||| | || |||||||| |||| | | |||||
Sbjct 1513 TGTGATGGTCGAGTTGAGATGCATGATCTATTATTTACAATGGCCAAGG-AGATTGTTGA 1571
Query 1497 AGATACCGCAGGGAAATAC-TGGCTG-TGGTCGTCGAATTGTGAAGAGTT---TACTAGT 1551
|| ||| |||| ||||| | | || || | ||||| ||||| |||||| | ||
Sbjct 1572 AGCTACTGCAGAGAAAT-CAAGATTGTTGCT-GTCGAGTTGTGCAGAGTTGAAAAATAAA 1629
Query 1552 GCGTTG---AGT-AACATAGAGGGAAAAGACAAGGTTAGAGGAATTATCATAGACATGTC 1607
| |||| | | || | |||||| ||||||||||||||||||| | ||||||||||
Sbjct 1630 GAGTTGTCTCTTGATCA-ACAGGGAAGAGACAAGGTTAGAGGAATTGTTTTAGACATGTC 1688
Query 1608 T-AATGTGGAGGAAATGCCCTTAGACA-ACCAAGCCTTTGTTGGTATGAGCAGTCTACGG 1665
| || ||||||||| ||||||| | | | | || ||||| ||||||||||||||||||
Sbjct 1689 TGAA-ATGGAGGAAAAGCCCTTAAAGAGAGC-AGTTTTTGTCGGTATGAGCAGTCTACGG 1746
Query 1666 TACCTGAAAGTGT---GTGATAC--TGGCC-A-T-A--GTGAAGCTCAGTGCAAGTTGA- 1714
||||||||||| | || | | || || | | | | || || |||||||||| |
Sbjct 1747 TACCTGAAAGTCTACAGTTCT-CTTTGTCCTACTCACTCTAAAACTGAGTGCAAGTT-AC 1804
Query 1715 ACTTACCCGATGTACTTGAATTCCCAAAAGATAATATTGTCCGCTATCTTAACTGGGTGA 1774
||||||| |||| ||||||||| |||||||||||||||||||| | |||| |||||||||
Sbjct 1805 ACTTACCTGATGGACTTGAATTTCCAAAAGATAATATTGTCCGATGTCTTCACTGGGTGA 1864
Query 1775 AATTCCCA-GGAAAGGAACTTCCATCAGACTTCGAACCCACA-AATCTTATCGATCTTAG 1832
|||| ||| ||| | ||||||||| ||||||| | |||| | ||||| |||||||||||
Sbjct 1865 AATTTCCAGGGACA-GAACTTCCACCAGACTTTTACCCCA-ATAATCTCATCGATCTTAG 1922
Query 1833 GTTGCCTTACAGTAAGATTACCAGTGTATGGAAAGATG--CTAAGGTTGCACCAGAA-CT 1889
||| |||||||| || ||||||| | ||||| || || ||||||||||||| || ||
Sbjct 1923 GTTACCTTACAGCAATATTACCACTCTATGG--AGCTGTACTAAGGTTGCACC-TAATCT 1979
Query 1890 G-AGATGGGTTGATCTCAGTCACTCGAGTAACTTGAGTTCCTTGTTAGGATTATCAGAAG 1948
| || |||||||||||||| |||||||||||||||| ||||||| | || ||||||||||
Sbjct 1980 GAAG-TGGGTTGATCTCAGCCACTCGAGTAACTTGAATTCCTTGATGGGTTTATCAGAAG 2038
Query 1949 CACCAAAACTTTTGAGATTAAACCTCGAAGGCTGCACGAGTTTGAAA-GAGTTACCAGAG 2007
||||||| |||||||||||||| || ||||||||||| ||||| ||| |||||||| ||
Sbjct 2039 CACCAAATCTTTTGAGATTAAATCTTGAAGGCTGCACAAGTTT-AAAGGAGTTACCTGAT 2097
Query 2008 GAGATGCAAA-AGATGAAGAAACTCGTTTCCCTAAACCTAAGAGGATGCACAAGTCTCTT 2066
|||||| ||| | |||| ||| || |||| ||| ||| |||||||||||||||| |||||
Sbjct 2098 GAGATG-AAAGATATGACGAATCTTGTTTTCCTGAACTTAAGAGGATGCACAAGCCTCTT 2156
Query 2067 GTCTCTGCCAAAGATCACTATGGATTCCCTGAAGACTCTCATTCTCAGCTGCTGCTCAAA 2126
|||||| ||||||||||||| | ||||| |||||||||||||||| ||| |||||||||
Sbjct 2157 GTCTCTACCAAAGATCACTACGAATTCCTTGAAGACTCTCATTCTTAGCGGCTGCTCAAG 2216
Query 2127 ATTTCAGACATTTGAGGTGATTTCA-AAGCATCTAGAAACTTTGTACTTAAACAACACTG 2185
|||||||||||||||||||||||| || |||||||| || | ||||||||| ||| |
Sbjct 2217 CTTTCAGACATTTGAGGTGATTTCAGAA-CATCTAGAGTCTCTATACTTAAACGGCACAG 2275
Query 2186 CA-ATAGATGAACTTCCTCCGA-CCATTGGTAATCTCCATGGACTTATCTTCTTGGATTT 2243
| ||| ||| ||||||||| | ||||||||||||||||| |||||||||| || ||||
Sbjct 2276 -AGATAAATGGACTTCCTCC-AGCCATTGGTAATCTCCATAGACTTATCTTTTTAAATTT 2333
Query 2244 GAAAGACTGCAAAAATCTGGCGACTCTTCCTGATTGTCTTTGGAAGATGAAATCTCTTCA 2303
|||||| ||||||||||| ||||||||||||||||||||| || || | |||||||||||
Sbjct 2334 GAAAGATTGCAAAAATCTAGCGACTCTTCCTGATTGTCTTGGGGAGCTTAAATCTCTTCA 2393
Query 2304 AGAACTCAAACTCTCTGGTTGCTCAAAGCTCAAGAGTTTCCCTAATGTTAAGGAGACCAT 2363
|||||||||||||||| | |||||||||||||| | |||||| |||||| || || ||
Sbjct 2394 AGAACTCAAACTCTCTCGCTGCTCAAAGCTCAAAATTTTCCCCGATGTTACGGCGAAAAT 2453
Query 2364 GGTAAA-TTTGC-GGATTTTGCTGCTTGATGGAACATCAATTCCACTGATGCCAAGCAAA 2421
|| ||| ||||| || |||| ||||| ||||| |||||||| || | ||||| |||
Sbjct 2454 GG-AAAGTTTGCTGG-TTTTACTGCTCGATGGGACATCAATAGCAGAGTTGCCATGCAGC 2511
Query 2422 ATTTTTGACTCATCCTT-TCTGAGGCGTCTATGCTTAAGCAGGAATGAAGAA-ATCTGCA 2479
|||||| ||| || ||| |||| | |||||||||||||||||||||| | || ||| |||
Sbjct 2512 ATTTTTCACTTAT-CTTCTCTGCGACGTCTATGCTTAAGCAGGAATG-ATAATATCCGCA 2569
Query 2480 GCCTACTATTTGACATGAGTCAAC-TGTTCCATCTGAAATGGCTCGAGTTGAAGTATTGT 2538
||| | |||||||||| ||| || ||||||||||||| ||||| ||||| |||||||||
Sbjct 2570 CCCTTCGATTTGACATGGGTC-ACATGTTCCATCTGAAGTGGCTTGAGTTAAAGTATTGT 2628
Query 2539 AAGAACCTTACATCTCTTCCGA-AGCTTCCACCGAATCTTCTGTGCTTAAATGCACATGG 2597
||||| || ||||||||||| | | |||||||| ||||||| ||||||||||||||||||
Sbjct 2629 AAGAATCTCACATCTCTTCCCATA-CTTCCACCAAATCTTCAGTGCTTAAATGCACATGG 2687
Query 2598 TTGTAGTTCACTAAGAACAGTTGCGAGTCCACTAGCCAGTCTTATGCCAACAGAGCAGAT 2657
|||| ||||||||||||||| || || || | | || || || ||||||||||||||
Sbjct 2688 CTGTACTTCACTAAGAACAGTCGCCAGCCCGCAAACCCTTCCTACACCAACAGAGCAGAT 2747
Query 2658 TCATTCCACCTTTATTCTT-ACTGACTGTCACAAACTGGAACAAGTCTCAAA-AAGTGCT 2715
|||||||||||||||| || ||| |||||||| |||| |||||||||||||| || ||||
Sbjct 2748 TCATTCCACCTTTATT-TTCACTAACTGTCACGAACTAGAACAAGTCTCAAAGAA-TGCT 2805
Query 2716 ATCATATCTTACATTCAGAAGAAAAGCCAGTTGATGTCAAATGATCGACATAGTCAGGAT 2775
||||| |||||| ||||||| |||||| | ||||||||| ||||||| |||||| ||||
Sbjct 2806 ATCATTTCTTACGTTCAGAAAAAAAGCAAATTGATGTCAGCTGATCGATATAGTCCGGAT 2865
Query 2776 TTCGTTTTCAAGTCCTTAATTGGTACTTGCTTTCCTGGATGTGATG-TACCAGCATGGTT 2834
|| |||| ||| ||||| ||||||||||||||||| |||||||| | |||| ||||||||
Sbjct 2866 TTTGTTTACAAATCCTTGATTGGTACTTGCTTTCCGGGATGTGA-GATACCTGCATGGTT 2924
Query 2835 CAACCACCAAGCACTTGGG-TCAGTCTTAAAACTGGAGCTGCCTCGAGATGGGAATG-AA 2892
|| ||||||||||| ||| |||||||||| ||||| || |||| || | ||||| ||
Sbjct 2925 TAATCACCAAGCACT-GGGATCAGTCTTAATCCTGGAACTTCCTCAAGCTTGGAATTCAA 2983
Query 2893 GGAAGATTAAGT-GGTATATTTCTATGTGTTGTAGTCTCATTTAAGGAGTATAAAGCCCA 2951
| | ||| || | || ||| |||||||||||||||||| ||||||||||||| || |||
Sbjct 2984 GTAGGAT-AA-TCGGGATAGCTCTATGTGTTGTAGTCTCGTTTAAGGAGTATAGAGACCA 3041
Query 2952 AAATAACAGTCTCCAAG 2968
||| | |||||||||||
Sbjct 3042 AAACAGCAGTCTCCAAG 3058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 162992397807
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5