BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333308
Length=345
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39420.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 534 2e-151
AT2G39410.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 357 4e-98
> AT2G39420.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:16460364-16463061 FORWARD LENGTH=1221
Length=1221
Score = 534 bits (289), Expect = 2e-151
Identities = 303/310 (98%), Gaps = 0/310 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAGTGAAACAGAGAACATCAAGTATGAAGAGAGTTTCATCAAGAACACTCGAGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 ATGGCAAGTGAAACAGAGAACATCAAGTATGAAGAGAGTTTCATCAAGAACACTCGAGGA 138
Query 61 ATGAAACTGTTCACGTGTAAATGGGTACCAGCAAATCAAGAGCCAAAGGCTTTAGTCTTC 120
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 139 ATGAAACTGTTCACGTGCAAATGGGTACCAGCAAAGCAAGAGCCAAAGGCTTTAGTCTTT 198
Query 121 ATTTGCCATGGTTATGCAATGGAATGTAGCATCACCATGAACAGTACTGCAAGGAGGCTT 180
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 199 ATTTGCCATGGATATGCAATGGAATGTAGCATCACCATGAACAGTACTGCGAGGAGGCTG 258
Query 181 GTGAAAGCAGGATTTGCGGTATATGGAATTGATTACGAAGGACATGGAAAATCTGATGGG 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 259 GTGAAAGCAGGATTTGCGGTATATGGAATTGATTACGAAGGGCATGGAAAATCTGATGGG 318
Query 241 CTTAGTGCTTATGTCCCAAACTTTGACCATCTCGTTGATGATGTCTCTACTCACTACACA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CTTAGTGCTTATGTCCCAAACTTTGACCATCTCGTTGATGATGTCTCTACTCACTACACA 378
Query 301 AGCATTTGCG 310
||||||||||
Sbjct 379 AGCATTTGCG 388
> AT2G39410.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:16455569-16458217 FORWARD LENGTH=1052
Length=1052
Score = 357 bits (193), Expect = 4e-98
Identities = 274/313 (88%), Gaps = 6/313 (2%)
Strand=Plus/Plus
Query 1 ATGGCAAGTGAAACAGAGAACATCAAGTATGAAGAGAGTTTCATCAAGAACACTCGAGGA 60
||||| | |||||||||| |||||||||| |||||||||||||| |||||||||||||||
Sbjct 99 ATGGCGATTGAAACAGAGGACATCAAGTACGAAGAGAGTTTCATAAAGAACACTCGAGGA 158
Query 61 ATGAAACTGTTCACGTGTAAATGGGTACCAGCAAATCA-AGAGCCAAAGGCTTTAGTCTT 119
| || ||||||| || | |||| ||||| |||| || |||||||| ||||||||| ||
Sbjct 159 TTTAAGTTGTTCACATGCAGATGGCTACCAACAAA-CAGAGAGCCAAGGGCTTTAGTTTT 217
Query 120 CATTTGCCATGGTTAT-GCAATGGAATGTAGCATCACCATGAACAGTACTGCAAGGAGGC 178
| |||||||||| ||| || |||||||| || ||||||||||| |||||||| || ||||
Sbjct 218 CCTTTGCCATGGATATGGC-ATGGAATGCAGTATCACCATGAATAGTACTGCTAGAAGGC 276
Query 179 TTGTGAAAGCAGGATTTGCGGTATATGGAATTGATTACGAAGGACATGGAAAATCTGATG 238
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 277 TTGTGAAGGCAGGATTTGCGGTATATGGAATGGATTATGAAGGACATGGAAAATCTGATG 336
Query 239 GGCTTAGTGCTTATGTCCCAAACTTTGACCATCTCGTTGATGATGTCTCTACTCACTACA 298
||||||| |||||| || |||||||||| | ||| |||||||||||||| ||||||||||
Sbjct 337 GGCTTAGCGCTTATATCTCAAACTTTGATCGTCTTGTTGATGATGTCTCAACTCACTACA 396
Query 299 CAAGC-ATTTGCG 310
|| || |||||||
Sbjct 397 CA-GCTATTTGCG 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16135947429
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5