BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg333309 Length=1275 Score E Sequences producing significant alignments: (Bits) Value AT2G39415.1 | Symbols: | F-box family protein | chr2:16458607-... 302 7e-81 > AT2G39415.1 | Symbols: | F-box family protein | chr2:16458607-16458966 REVERSE LENGTH=360 Length=360 Score = 302 bits (163), Expect = 7e-81 Identities = 197/214 (92%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 3 GGCAGACGACGGTGGAAACGGAGACGGCGCCACCTCCGGTGACTGCTACGCTCATCATCA 62 |||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 9 GGCAGACGACGGCGGAAACGGAGACGGTGCCACCGCCGGTGACTGCTACGCTCATCATCA 68 Query 63 CCGCCGAGATATCAAACTAGCAGGAGATTCAAGTGAAAATTTAGACTCAATCAGCTCTCT 122 | | ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| || Sbjct 69 CTACAGAGATGTCAAACTAGCAAGAGATGCAAGTGAAAATATAGACTCAATCAGCTCGCT 128 Query 123 GCCTGATGTGATCCTCCAACAAATCCTCTCCTATCTTCCGACCAAATTATCCATCAGAAC 182 ||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||| Sbjct 129 TCCTGATGTGATCCTCCAACAAATCCTCTCCTCTCTTCCGACCAATTTAGCTATCAGAAC 188 Query 183 TTCAGTCTTGTCCACAAGATGGAGGCATGTATGG 216 |||||||||||||||| ||||||||||||||||| Sbjct 189 TTCAGTCTTGTCCACACGATGGAGGCATGTATGG 222 Score = 150 bits (81), Expect = 3e-35 Identities = 86/88 (98%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 210 TGTAT-GGGGACTGAAGGCTGATACGTTAAACAAAACCCTAGCTCGATACAAGCTTCCCA 268 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 263 TGTATAGGGGACTGAAGGCTGATACGATAAACAAAACCCTAGCTCGATACAAGCTTCCCA 322 Query 269 AGATTATGAGTTTTCACCTCTATACCAA 296 |||||||||||||||||||||||||||| Sbjct 323 AGATTATGAGTTTTCACCTCTATACCAA 350 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62700480705 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5