BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333309

Length=1275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39415.1 | Symbols:  | F-box family protein | chr2:16458607-...   302    7e-81


> AT2G39415.1 | Symbols:  | F-box family protein | chr2:16458607-16458966 
REVERSE LENGTH=360
Length=360

 Score =  302 bits (163),  Expect = 7e-81
 Identities = 197/214 (92%), Gaps = 0/214 (0%)
 Strand=Plus/Plus

Query  3    GGCAGACGACGGTGGAAACGGAGACGGCGCCACCTCCGGTGACTGCTACGCTCATCATCA  62
            |||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct  9    GGCAGACGACGGCGGAAACGGAGACGGTGCCACCGCCGGTGACTGCTACGCTCATCATCA  68

Query  63   CCGCCGAGATATCAAACTAGCAGGAGATTCAAGTGAAAATTTAGACTCAATCAGCTCTCT  122
            |  | ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| ||
Sbjct  69   CTACAGAGATGTCAAACTAGCAAGAGATGCAAGTGAAAATATAGACTCAATCAGCTCGCT  128

Query  123  GCCTGATGTGATCCTCCAACAAATCCTCTCCTATCTTCCGACCAAATTATCCATCAGAAC  182
             ||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||
Sbjct  129  TCCTGATGTGATCCTCCAACAAATCCTCTCCTCTCTTCCGACCAATTTAGCTATCAGAAC  188

Query  183  TTCAGTCTTGTCCACAAGATGGAGGCATGTATGG  216
            |||||||||||||||| |||||||||||||||||
Sbjct  189  TTCAGTCTTGTCCACACGATGGAGGCATGTATGG  222


 Score =  150 bits (81),  Expect = 3e-35
 Identities = 86/88 (98%), Gaps = 1/88 (1%)
 Strand=Plus/Plus

Query  210  TGTAT-GGGGACTGAAGGCTGATACGTTAAACAAAACCCTAGCTCGATACAAGCTTCCCA  268
            ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  263  TGTATAGGGGACTGAAGGCTGATACGATAAACAAAACCCTAGCTCGATACAAGCTTCCCA  322

Query  269  AGATTATGAGTTTTCACCTCTATACCAA  296
            ||||||||||||||||||||||||||||
Sbjct  323  AGATTATGAGTTTTCACCTCTATACCAA  350



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 62700480705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5