BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333310
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28470.1 | Symbols: BGAL8 | beta-galactosidase 8 | chr2:1216... 2466 0.0
> AT2G28470.1 | Symbols: BGAL8 | beta-galactosidase 8 | chr2:12168840-12173570
REVERSE LENGTH=3068
Length=3068
Score = 2466 bits (1335), Expect = 0.0
Identities = 1502/1584 (95%), Gaps = 6/1584 (0%)
Strand=Plus/Plus
Query 25 GGACTTCTTAGACAACCAAAATGGGGACACTTGCGAGATCTACACAAGGCTATCAAGCTT 84
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1281 GGACTACTTAGACAACCAAAATGGGGACACTTACGAGATCTACACAAGGCTATCAAGCTT 1340
Query 85 TGTGAAGATGCATTGATTGCCACAGATCCAACAATTTCTTCTTTGGGTTCAAATTTGGAG 144
|||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 1341 TGTGAAGATGCATTGATTGCCACAGATCCAACAATTACTTCTCTAGGTTCAAATTTGGAG 1400
Query 145 GCTGCTGTATATAAGACAGCATCTGGATCATGTGCTGCTTTTCTTGCAAATGTTGGCACG 204
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1401 GCTGCTGTATATAAAACAGAATCTGGATCATGTGCTGCTTTTCTTGCAAATGTTGACACG 1460
Query 205 AAATCTGATGCAACTGTGAGTTTCAATGGAGAATCATATCACTTGCCTGCATGGTCCGTA 264
|| |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 1461 AAGTCTGATGCAACTGTGACTTTCAATGGAAAATCATATAACTTGCCTGCATGGTCCGTA 1520
Query 265 AGCATCTTGCCGGATTGCAAAAATGTAGCCTTCAACACCGCAAAGATAAACTCTGCAACT 324
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 1521 AGCATCTTGCCGGATTGCAAAAATGTAGCTTTCAATACCGCAAAGATAAATTCTGCAACT 1580
Query 325 GAGCCTACCGCATTTGCTCGTCAATCATTGAAGCCTGATGGTGGTTCATCTGCGGAGTTA 384
||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1581 GAGTCTACCGCATTTGCTCGTCAATCATTAAAGCCCGATGGTGGTTCGTCTGCGGAGTTA 1640
Query 385 GGTTCAGAATGGAGTTACATTAAAGAACCTATTGGAATTTCCAAGGCTGATGCATTCTTG 444
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1641 GGTTCACAATGGAGTTACATTAAAGAACCTATTGGAATTTCCAAAGCTGATGCATTCTTG 1700
Query 445 AAACCTGGATTGCTAGAGCAGATAAACACAACAGCTGATAAAAGTGATTACTTGTGGTAC 504
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1701 AAACCTGGATTGCTAGAGCAGATTAACACAACAGCTGATAAAAGCGATTACTTGTGGTAC 1760
Query 505 TCGCTAAGGATGGATATTAAAGGCGATGAGACTTTCCTTGACGAAGGATCTAAAGCCGTC 564
|| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1761 TCACTAAGGACGGATATAAAAGGCGATGAGACTTTCCTTGACGAGGGATCTAAAGCCGTC 1820
Query 565 CTTCACATTGAATCTCTTGGTCAAGTGGTCTATGCTTTTATAAATGGAAAACTTGCAGGA 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 CTTCACATTGAATCTCTTGGTCAAGTGGTCTATGCTTTTATAAATGGAAAACTTGCAGGA 1880
Query 625 AGCGGACATGGCAAACAGAAGATTTCTTTGGATATCCCGATTAATCTTGTAGCCGGGAAG 684
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
Sbjct 1881 AGCGGACATGGCAAACAGAAGATTTCTTTGGATATACCGATTAATCTTGTAACCGGGACG 1940
Query 685 AACACAGTTGATCTCCTTAGTGTGACCGTAGGGCTTGCGAATTATGGAGCTTTCTTTGAC 744
|||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1941 AACACAATCGATCTCCTTAGTGTTACCGTAGGGCTTGCGAATTATGGAGCTTTCTTTGAC 2000
Query 745 TTAGTGGGAGCAGGAATAACCGGTCCTGTGACACTTAAGAGCGCTAAAGGTGGTAGCTCA 804
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 2001 TTAGTGGGAGCAGGAATAACCGGACCTGTGACACTTAAAAGCGCTAAAGGTGGTAGCTCA 2060
Query 805 ATTGATTTGGCTTCACAGCAATGGACTTATCAGGTTGGACTCAAAGGGGAAGACACAGGT 864
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2061 ATTGATTTGGCTTCACAGCAATGGACTTATCAGGTTGGACTCAAAGGAGAAGACACAGGT 2120
Query 865 CTGGGAGCTGTAGATTCTTCTGAATGGGTTTCAAAGTCTCCTCTGCCCACTAAACAGCCA 924
||| | ||||||||||||||||||||||||||||||||||| |||| |||||||| |||
Sbjct 2121 TTGGCAACTGTAGATTCTTCTGAATGGGTTTCAAAGTCTCCTTTGCCTACTAAACAACCA 2180
Query 925 CTGATTTGGTACAAGACAACATTTGATGCTCCTTCTGGGAGCGAGCCCGTTGCGATAGAC 984
|| |||||||||||||| ||||||||||||||||||||||||||||| || || ||||||
Sbjct 2181 CTTATTTGGTACAAGACGACATTTGATGCTCCTTCTGGGAGCGAGCCAGTAGCTATAGAC 2240
Query 985 TTCACGGGTACAGGAAAGGGCATTGCATGGGTGAATGGACAGAGCATAGGTAGGTACTGG 1044
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2241 TTCACGGGTACAGGAAAGGGTATTGCATGGGTGAATGGACAGAGCATAGGTAGGTACTGG 2300
Query 1045 CCAACCAGTATCGCTGGAAACGGCGGTTGCACAGATTCATGCGACTATAGAGGATCTTAC 1104
||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 2301 CCAACTAGTATCGCTGGAAATGGCGGTTGTACAGAATCATGCGACTATAGAGGTTCTTAC 2360
Query 1105 CGCGCAAACAAATGCCTCAAGAACTGCGGAAAACCTTCACAAACATTGTATCACGTCCCT 1164
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||
Sbjct 2361 CGTGCAAACAAATGCCTCAAGAACTGTGGAAAACCTTCACAGACATTGTATCATGTACCT 2420
Query 1165 CGCTCGTGGCTAAAACCGAGTGGGAACACACTTGTTCTGTTTGAGGAGATGGGAGGAGAT 1224
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 2421 CGCTCGTGGCTAAAACCGAGCGGGAACATACTTGTTCTGTTTGAGGAGATGGGAGGAGAT 2480
Query 1225 CCAACACAAATATCATTCGGGACAAAACAAACAGGAAGCAATCTTTGTCTAACGGTGTCA 1284
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 2481 CCAACACAAATATCATTTGCGACAAAACAAACAGGAAGCAATCTTTGTCTAACGGTGTCA 2540
Query 1285 CAGTCTCATCCACCACCGGTGGACACATGGACTTCTGACTCAAAGATCTCAAACAGAAAC 1344
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2541 CAGTCTCATCCACCACCGGTGGACACATGGACTTCCGACTCAAAGATCTCAAACAGAAAC 2600
Query 1345 AGAACCAGGCCGGTTCTTTCCTT-ACAATGCCCTGTCTCCACTCAGGTCATATCTTCTAT 1403
|||||||||||||||||||| || | |||||||| |||| |||||||| |||| ||||||
Sbjct 2601 AGAACCAGGCCGGTTCTTTCGTTGA-AATGCCCTATCTCTACTCAGGTGATATTTTCTAT 2659
Query 1404 AAAATTTGCAAGCTTCGGTACACCCAAAGGTACTTGCGGTAGCTTCAC-CAGCGGC-AGT 1461
||||||||||||||| |||||||||||||||||||||||||||||||| || ||| | |
Sbjct 2660 AAAATTTGCAAGCTTTGGTACACCCAAAGGTACTTGCGGTAGCTTCACACAA-GGCCA-T 2717
Query 1462 TGCAACAGCTCTCGATCTCTCTCCCTCGTTCAAAAGGCATGTATTGGATCGAGGAGTTGC 1521
||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 2718 TGCAATAGCTCTCGATCTCTCTCCCTCGTCCAAAAGGCATGTATTGGATTGAGGAGTTGC 2777
Query 1522 AACATTGAAGTCTCGACTAGAGTGTTCGGGGAACCTTGTCGTGGCGTCGTCAAGAGTTTA 1581
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2778 AACGTTGAAGTATCGACTAGAGTGTTCGGGGAACCTTGTCGTGGCGTCGTCAAGAGCTTA 2837
Query 1582 GCTGTTGAAGCTTCTTGTTCATGA 1605
||||||||||||||||||||||||
Sbjct 2838 GCTGTTGAAGCTTCTTGTTCATGA 2861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5