BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg333316 Length=630 Score E Sequences producing significant alignments: (Bits) Value AT3G54540.1 | Symbols: ATGCN4, GCN4 | general control non-repre... 721 0.0 > AT3G54540.1 | Symbols: ATGCN4, GCN4 | general control non-repressible 4 | chr3:20189805-20192792 FORWARD LENGTH=2500 Length=2500 Score = 721 bits (390), Expect = 0.0 Identities = 555/635 (87%), Gaps = 10/635 (2%) Strand=Plus/Plus Query 1 ATGGGGACACGAGTAGCGATAGTTGGGCCTAACGGAGCTGGAAAGTCGACTCTTTTGAAT 60 ||||||||||| || ||||||||||||||||||||||| |||||||| ||||| || ||| Sbjct 1664 ATGGGGACACGGGTTGCGATAGTTGGGCCTAACGGAGCAGGAAAGTCCACTCTATTAAAT 1723 Query 61 CTTATTGCGGGAGATTTAGTTCCGAGTGAGGGTGAAGTGAGAAGAAGCCAGAAGCTGAGG 120 ||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| Sbjct 1724 CTTCTTGCGGGAGATTTAGTTCCAACAGAGGGTGAAATGAGAAGAAGCCAGAAGCTGAGG 1783 Query 121 ATCGGCAGGTACTCGCAGCACTTTGTTGATCAGTTATCAATGTGGGAGACACCGGTTGAG 180 || |||||||| || ||||| |||||||| | ||| ||||| |||| ||||||||| || Sbjct 1784 ATTGGCAGGTATTCTCAGCATTTTGTTGACCTTTTAACAATGGGGGAAACACCGGTTCAG 1843 Query 181 TATCTTCTTCGTCTGT-ATCCTGACCAAGAGGGATGTAGCAAACAAGAGGCGGTGCGTGC 239 ||||| |||||||| | |||||||||||||||||| |||||| |||||||| ||||| || Sbjct 1844 TATCTCCTTCGTCT-TCATCCTGACCAAGAGGGATTTAGCAAGCAAGAGGCAGTGCGAGC 1902 Query 240 AAAACTGGGCAAGTTTGGGCTAACAGGTGAAAACCA-TTCAACTCCAACTGCGAAATTGT 298 || || ||||||||||||||| || || | || || || | |||||| ||||||||||| Sbjct 1903 GAAGCTAGGCAAGTTTGGGCTACCAAGTCACAATCACTT-ATCTCCAATTGCGAAATTGT 1961 Query 299 CTGGAGGACAAAAGGCTAGGGTTGTGTTAACCTCAATCTCAATGTCGAAGCCACACATTT 358 |||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||| Sbjct 1962 CTGGAGGACAAAAGGCTAGGGTTGTGTTCACCTCGATCTCAATGTCAAAACCACACATTT 2021 Query 359 TGCTTCTTGACGAGCCAACAAATCACCTCGACATGCAGACG-ATAGATGCCTTGGCGGAT 417 ||||||| |||||||| ||||||||| | |||||||||| | |||||||||||||||||| Sbjct 2022 TGCTTCTGGACGAGCCTACAAATCACTTAGACATGCAGA-GTATAGATGCCTTGGCGGAT 2080 Query 418 GCACTAGATGAGTTCAAAGGAGGAGTTGTGTTGGTCAGCCACGACTCGAGACTCATAAGC 477 |||||||||||||||| ||| |||||||||||||| || |||||||||||||||||| | Sbjct 2081 GCACTAGATGAGTTCACAGGTGGAGTTGTGTTGGTGAGTCACGACTCGAGACTCATAT-C 2139 Query 478 -CGTGTCTGTGAGGATGAGGAGAAGAGTGAAATTTGGCTTGTGGAAGACGGGACAGTGAC 536 ||||| |||| ||| |||||||||||| |||||||| |||| |||||||| ||||||| Sbjct 2140 ACGTGTATGTGCGGAAGAGGAGAAGAGTCAAATTTGGGTTGTAGAAGACGGAACAGTGAA 2199 Query 537 TTTCTTCCGAGGCACGTTTGAAGAGTACAAAGAAGAACTC-ATTGGAGAAATCAAAGCAG 595 |||||||| |||||| |||||||||||||||||||| ||| | | |||||||||||||| Sbjct 2200 TTTCTTCCCAGGCACATTTGAAGAGTACAAAGAAGATCTCCAAAG-AGAAATCAAAGCAG 2258 Query 596 AGGTTGATGAGTTAACTTCTCTTGTTGGCTGCTAA 630 | |||||||||| || || | ||||| ||| |||| Sbjct 2259 AAGTTGATGAGTGAAGTTTTGTTGTTAGCTTCTAA 2293 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30391658935 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5