BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333316
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54540.1 | Symbols: ATGCN4, GCN4 | general control non-repre... 721 0.0
> AT3G54540.1 | Symbols: ATGCN4, GCN4 | general control non-repressible
4 | chr3:20189805-20192792 FORWARD LENGTH=2500
Length=2500
Score = 721 bits (390), Expect = 0.0
Identities = 555/635 (87%), Gaps = 10/635 (2%)
Strand=Plus/Plus
Query 1 ATGGGGACACGAGTAGCGATAGTTGGGCCTAACGGAGCTGGAAAGTCGACTCTTTTGAAT 60
||||||||||| || ||||||||||||||||||||||| |||||||| ||||| || |||
Sbjct 1664 ATGGGGACACGGGTTGCGATAGTTGGGCCTAACGGAGCAGGAAAGTCCACTCTATTAAAT 1723
Query 61 CTTATTGCGGGAGATTTAGTTCCGAGTGAGGGTGAAGTGAGAAGAAGCCAGAAGCTGAGG 120
||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 1724 CTTCTTGCGGGAGATTTAGTTCCAACAGAGGGTGAAATGAGAAGAAGCCAGAAGCTGAGG 1783
Query 121 ATCGGCAGGTACTCGCAGCACTTTGTTGATCAGTTATCAATGTGGGAGACACCGGTTGAG 180
|| |||||||| || ||||| |||||||| | ||| ||||| |||| ||||||||| ||
Sbjct 1784 ATTGGCAGGTATTCTCAGCATTTTGTTGACCTTTTAACAATGGGGGAAACACCGGTTCAG 1843
Query 181 TATCTTCTTCGTCTGT-ATCCTGACCAAGAGGGATGTAGCAAACAAGAGGCGGTGCGTGC 239
||||| |||||||| | |||||||||||||||||| |||||| |||||||| ||||| ||
Sbjct 1844 TATCTCCTTCGTCT-TCATCCTGACCAAGAGGGATTTAGCAAGCAAGAGGCAGTGCGAGC 1902
Query 240 AAAACTGGGCAAGTTTGGGCTAACAGGTGAAAACCA-TTCAACTCCAACTGCGAAATTGT 298
|| || ||||||||||||||| || || | || || || | |||||| |||||||||||
Sbjct 1903 GAAGCTAGGCAAGTTTGGGCTACCAAGTCACAATCACTT-ATCTCCAATTGCGAAATTGT 1961
Query 299 CTGGAGGACAAAAGGCTAGGGTTGTGTTAACCTCAATCTCAATGTCGAAGCCACACATTT 358
|||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 1962 CTGGAGGACAAAAGGCTAGGGTTGTGTTCACCTCGATCTCAATGTCAAAACCACACATTT 2021
Query 359 TGCTTCTTGACGAGCCAACAAATCACCTCGACATGCAGACG-ATAGATGCCTTGGCGGAT 417
||||||| |||||||| ||||||||| | |||||||||| | ||||||||||||||||||
Sbjct 2022 TGCTTCTGGACGAGCCTACAAATCACTTAGACATGCAGA-GTATAGATGCCTTGGCGGAT 2080
Query 418 GCACTAGATGAGTTCAAAGGAGGAGTTGTGTTGGTCAGCCACGACTCGAGACTCATAAGC 477
|||||||||||||||| ||| |||||||||||||| || |||||||||||||||||| |
Sbjct 2081 GCACTAGATGAGTTCACAGGTGGAGTTGTGTTGGTGAGTCACGACTCGAGACTCATAT-C 2139
Query 478 -CGTGTCTGTGAGGATGAGGAGAAGAGTGAAATTTGGCTTGTGGAAGACGGGACAGTGAC 536
||||| |||| ||| |||||||||||| |||||||| |||| |||||||| |||||||
Sbjct 2140 ACGTGTATGTGCGGAAGAGGAGAAGAGTCAAATTTGGGTTGTAGAAGACGGAACAGTGAA 2199
Query 537 TTTCTTCCGAGGCACGTTTGAAGAGTACAAAGAAGAACTC-ATTGGAGAAATCAAAGCAG 595
|||||||| |||||| |||||||||||||||||||| ||| | | ||||||||||||||
Sbjct 2200 TTTCTTCCCAGGCACATTTGAAGAGTACAAAGAAGATCTCCAAAG-AGAAATCAAAGCAG 2258
Query 596 AGGTTGATGAGTTAACTTCTCTTGTTGGCTGCTAA 630
| |||||||||| || || | ||||| ||| ||||
Sbjct 2259 AAGTTGATGAGTGAAGTTTTGTTGTTAGCTTCTAA 2293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5