BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333335
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43700.1 | Symbols: | Concanavalin A-like lectin protein ki... 706 0.0
AT2G43690.1 | Symbols: | Concanavalin A-like lectin protein ki... 322 7e-87
> AT2G43700.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr2:18115092-18118844 FORWARD LENGTH=3207
Length=3207
Score = 706 bits (382), Expect = 0.0
Identities = 572/663 (86%), Gaps = 16/663 (2%)
Strand=Plus/Plus
Query 397 GTCACCTTATCATCACCAGAGGAGGCTTATTACCCGAATC-AGCCACTTCTATT-ACTGA 454
|||||||||||||||||||||||||||||||||||||| | |||| ||||| || | |||
Sbjct 1474 GTCACCTTATCATCACCAGAGGAGGCTTATTACCCGAA-CAAGCCTCTTCT-TTCATTGA 1531
Query 455 ACCAAGATCTGTCACCGTAT-TTGTTGGAGAAAATGTATCTCGGCTACACTGCCTCCACA 513
|||||||||| ||||| ||| || |||||||| |||||| | |||| | | ||||| ||
Sbjct 1532 ACCAAGATCTATCACCCTATATT-TTGGAGAACATGTATGTGGGCTTCTCAGCCTCAACG 1590
Query 514 GGTTCGGTTGGAGCATTACATTACATATGGACGTTACATGTGT--ATGATATCGCTG-TG 570
|| || ||| ||||| | |||||||| | || ||| | ||| ||| || || |
Sbjct 1591 GGGTCTGTTAGAGCAATGCATTACATGTTGA-GTT-GGTTTGTACATGGCGGCGTTGAT- 1647
Query 571 GATCCAGATCTGGATTTCCCTATACCGACGTTTCCTCCATATCCCAAGCCAAAGTCTCAG 630
| |||| | ||||| || ||||| || |||||||||||||||||| ||| |||| |
Sbjct 1648 GTTCCAAACCTGGACTTGGGAATACCAACATTTCCTCCATATCCCAAGGAAAAATCTCTG 1707
Query 631 G-TAAGACGGACTGTCTTGGTGACTTGCTTGACATTGGTCCTCTTTGTTGCGGTTGCTGC 689
| | | |||| ||| |||||||| ||||| ||||||| |||||||||||| ||| |||
Sbjct 1708 GTTTA-TCGGATTGTTTTGGTGACCAGCTTGGCATTGGTTCTCTTTGTTGCGCTTGTTGC 1766
Query 690 ATCAGCTTTAAGTCTCTTCTTCTATAGAAGACATAAAAAGGTTAAGGAGGTTCTAGAGGA 749
||||||||||||| |||| ||||| || ||||||||||||||||| ||||||||||||||
Sbjct 1767 ATCAGCTTTAAGTATCTTTTTCTACAGGAGACATAAAAAGGTTAAAGAGGTTCTAGAGGA 1826
Query 750 ATGGGAGATCCAATGTGGGCCTCATAGGTTTGCTTACAAAGAACTCTTTAAAGCCACAAA 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1827 ATGGGAGATCCAATGTGGGCCTCATAGGTTTGCTTACAAAGAACTCTTTAAAGCCACAAA 1886
Query 810 GGGTTTCAAACAACTTGTGGGCAAAGGAGGGTTCGGTCAGGTTTTTAAGGGTACACTTCC 869
||||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||
Sbjct 1887 AGGTTTCAAACAACTTCTAGGCAAAGGAGGGTTTGGTCAGGTCTTTAAGGGTACACTTCC 1946
Query 870 AGGTTCAGACGCAGAAATTGCTGTTAAACGGATCTCTCATGATTCAAGACAAGGAATGCA 929
|||||| || ||||| ||||| |||||||| || || |||||||||| ||||||||||||
Sbjct 1947 AGGTTCTGATGCAGAGATTGCCGTTAAACGAATTTCACATGATTCAAAACAAGGAATGCA 2006
Query 930 GGAATTCTTAGCAGAGATATCGACAATTTGTCGGCTTAGACACCCA-AACCTAGTCAGGC 988
||||||||| || ||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct 2007 GGAATTCTTGGCTGAGATATCGACAATTGGTCGGCTTAGACACC-AGAACCTAGTCAGGC 2065
Query 989 TTCAGGGTTACTGTAGGTACAAGGAGGAGCTTTACTTGGTTTATGACTTTATGCCCAATG 1048
|||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2066 TTCAGGGTTATTGTAGGTACAAGGAGGAACTCTACTTGGTTTATGACTTTATGCCCAATG 2125
Query 1049 GAA 1051
|||
Sbjct 2126 GAA 2128
Score = 669 bits (362), Expect = 0.0
Identities = 593/702 (84%), Gaps = 25/702 (4%)
Strand=Plus/Plus
Query 1052 CAACTCACTTGGGA-CAACGTTTCAAGATCATCAAAGATGTAGCCTCTGGACTCTGTTAT 1110
|||||||||||| | ||||||||||||||||||||||| ||||||||| |||||| |||
Sbjct 2167 CAACTCACTTGGAATCAACGTTTCAAGATCATCAAAGACATAGCCTCTGCACTCTGCTAT 2226
Query 1111 CTGCATCACGAGTGGGTACAAGTCGTAATTCATCGAGATATCAAGCCTGCAAATGTCTTG 1170
||||||| || ||||||||||| |||||||||||||| |||||||| ||||||||| ||
Sbjct 2227 TTGCATCATGAATGGGTACAAGTTGTAATTCATCGAGACATCAAGCCGGCAAATGTCCTG 2286
Query 1171 ATTGACCATCAGATGAATGCGAGACTCGGGGATTTCGGGCTAGCCAAGTTGTACTATCAG 1230
|||||||| || |||||||| || ||||||||||| ||| | || ||||||||| |||||
Sbjct 2287 ATTGACCACCAAATGAATGCAAGGCTCGGGGATTTTGGGTTGGCTAAGTTGTACGATCAG 2346
Query 1231 GGTTATGATCCTCAAACATCGAGAGTAGCTGGAACATT-TGGGTACATTGCCCCCGAGCT 1289
|||||||||||||| ||||| ||||| ||||| ||||| | |||||||||| || |||||
Sbjct 2347 GGTTATGATCCTCAGACATCTAGAGTTGCTGGGACATTCT-GGTACATTGCACCGGAGCT 2405
Query 1290 CATAAGAAGTGGAAGAGCAACCACAGGGACAGACGTCTACGCCTTTCGG-CTGTTTATAC 1348
||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||| |
Sbjct 2406 CATAAGAAGCGGAAGAGCAACCACAGGGACAGACGTCTATGCCTT-CGGGCTGTTTATGC 2464
Query 1349 TGGAAGTCTCTTGCGGTAGAAGGCTGATAGAGCCACGAGCAGCCACCAACGAGGTCGTCC 1408
| ||||||||||||||||| ||||||||||||| | || ||||| || ||||||||||||
Sbjct 2465 TAGAAGTCTCTTGCGGTAGGAGGCTGATAGAGCGAAGAACAGCCTCCGACGAGGTCGTCC 2524
Query 1409 TTGCAGAATGGACATTAGAA-TGCTGGGAAAACGGAGATATCCTTAAGGCAGCCAATGAA 1467
| || |||||||||||| || |||||||||||||||||||| || |||||| ||||||
Sbjct 2525 TAGCTGAATGGACATTA-AAGTGCTGGGAAAACGGAGATATTCTCGAGGCAGTCAATGAT 2583
Query 1468 AGACTCCACCAAGAACACAATAGAGAACAGCTCGAGATTGTTCTGAAACTGGGAGTATTA 1527
|| ||| || ||| |||||||||||||||||||| ||||| ||||| ||||||| ||
Sbjct 2584 GGAATCCGTCACGAAGACAATAGAGAACAGCTCGAGCTTGTTTTGAAATTGGGAGTGTTG 2643
Query 1528 TGTTCGCACCAGGTTGCAACAGTTAGGCCTGACATGTCTAAAGTGGTCCGGATCTTAAAC 1587
||||||||||||| || | || ||||||| ||||||||||| ||||||| ||||||
Sbjct 2644 TGTTCGCACCAGGCTGTAGCAATTAGGCCAGACATGTCTAAGGTGGTCCAGATCTTGGGT 2703
Query 1588 GGTGAT-TCGAAGCTTCC-GAGTAATTTGCTGGATATTGTCAAGGCCGAGAGGGTTAGAA 1645
|||||| | | ||||||| || |||| | || ||||| ||||| || |||| ||| ||||
Sbjct 2704 GGTGATCT-GCAGCTTCCAGA-TAATCTACTCGATATAGTCAAAGCAGAGAAGGTCAGAA 2761
Query 1646 TGTGGTCTGAGACATCTGATAGT--A-TTC---------CATCACA-GGAGTCCATCGGT 1692
||||||||||||||||||| ||| | || ||||||| || |||||| |||
Sbjct 2762 TGTGGTCTGAGACATCTGAGAGTGTACTTGGTGTTTTGACATCACAAGG-GTCCATTGGT 2820
Query 1693 ACCTTGACATTTACGGAACCTTTCACTTCCCACGGACGCTGA 1734
|||||||| || ||||||||||| || |||| |||||||||
Sbjct 2821 ACCTTGACGTTAACGGAACCTTTTACCTCCCGGGGACGCTGA 2862
> AT2G43690.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr2:18112589-18114583 FORWARD LENGTH=1995
Length=1995
Score = 322 bits (174), Expect = 7e-87
Identities = 460/594 (77%), Gaps = 35/594 (6%)
Strand=Plus/Plus
Query 1050 AACAACTCACTTGG-GACAACGTTTCAAGATCATCAAAGATGTAGCCTCTGGACTCTGTT 1108
|||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1283 AACAACTCTCTTGGAGTCAACGTTTCAAGATCATCAAAGATGTAGCCTCTGCACTCTCCT 1342
Query 1109 ATCTGCATCACGAGTGGGTACAAGTCGTAATTCATCGAGATATCAAGCCTGCAAATGT-C 1167
|||| ||||| | |||| |||| ||||| |||||| |||| |||||||| ||||| || |
Sbjct 1343 ATCTCCATCATGGGTGGATACATGTCGTCATTCATAGAGACATCAAGCCAGCAAACGTGC 1402
Query 1168 TTGATTGACCATCA-GATGAATGCGAGACTCGGGGATTTCGGGCTAGCCAAGTTGTACT- 1225
| || || | || ||||||||| || || || |||||||| | || ||| | || |
Sbjct 1403 TA-ATCGATGA-CAAGATGAATGCAAGTCTTGGAGATTTCGGATTGGCTAAGGTATA-TG 1459
Query 1226 ATCAGGGTTATGATCCTCAAACATCGAGAGTAGCTGGAACATTTGGGTACATTGCCCCCG 1285
|||| || |||||||||||||| || ||||||||||||||||| |||||||| || || |
Sbjct 1460 ATCAAGGATATGATCCTCAAACCTCTAGAGTAGCTGGAACATTCGGGTACATGGCGCCAG 1519
Query 1286 AGCTCATAAGAAGTGGAAGAGCAACCACAGGGA-CAGACGTCTACGCCTTTCGGC-TGTT 1343
|| |||| |||| |||||| |||| | |||| | || || ||||| ||| || ||||
Sbjct 1520 AGATCATGAGAACCGGAAGACCAACTAT-GGGAACGGATGTTTACGCTTTT-GGTATGTT 1577
Query 1344 TATACTGGAAGTCTCTTGCGGTAGAAGGCTGATAGAGCCACGAGCAGCCACC-AACGAGG 1402
||| || ||||| ||||||| ||||| ||| | ||||||||||||| | || ||||
Sbjct 1578 TATGCTTGAAGTTTCTTGCGATAGAAAACTGTTTGAGCCACGAGCAGAGTCGGAA-GAGG 1636
Query 1403 -TCGTCCTTGCAGAA-TGGAC-ATTAGAAT-GCTGGGAAAACGGAGATATCCTTA-AGGC 1457
| || || | || ||| | || | ||| | ||||||||||| ||||| | | ||||
Sbjct 1637 CTATTC-TTACT-AACTGGGCGAT-A-AATTGTTGGGAAAACGGTGATATTGT-AGAGGC 1691
Query 1458 AGCCAATGAAAGACTCC-ACCAAGA-ACACAATA-GAGAACAGCTCGAGATTGTTCTGAA 1514
||| | ||||||| ||| || |||| | | ||| | || ||||||||| ||||||||||
Sbjct 1692 AGCTACTGAAAGAATCCGAC-AAGATA-ATGATAAGGGA-CAGCTCGAGCTTGTTCTGAA 1748
Query 1515 ACTGGGAGTATTATGTTCGCACCAGGTTGCAACAG-TTAGGCCTGACATGTCTAAAGTGG 1573
|| ||||| ||||||||||| ||| || || || ||||||| || ||| ||| ||| |
Sbjct 1749 GCTAGGAGTGTTATGTTCGCATGAGGCTG-AAGAGGTTAGGCCGGATATGGCTACAGTTG 1807
Query 1574 TCCGGATCTTAAACGGTGATTC-GAAGCTTCCG-AGTAATTTGCTGGATATTGT 1625
| ||| || ||||| | ||| || ||||||| | ||| |||| ||||||||
Sbjct 1808 TTAAGATTTTGAACGGAGTTTCTGA-GCTTCCGGA-TAACCTGCTTGATATTGT 1859
Score = 235 bits (127), Expect = 1e-60
Identities = 162/179 (91%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 16 TGGTTAATGGTTCTGGTGATCATTGCTCTGTTTAATCTTGAAAACTCACTTGGCAGGCTT 75
||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 25 TGGTTGATGGTTCTGGTGATCATTGCTCTGTCTAATCTTGAAAGCTCACTTGGCAGGCTT 84
Query 76 GTTTTTGAGGCATCCACTGGGATT-ATTAATGGTTTCCCAATGTTGACAAACACCAAGAA 134
|||||||||| |||| | ||| || || ||||||||| | | ||||||||||||||||||
Sbjct 85 GTTTTTGAGGGATCCGCCGGG-TTAATGAATGGTTTCACGACGTTGACAAACACCAAGAA 143
Query 135 GCACGTCTATGGTCAAGCCTTCGATGACGAGCCATTCCCTTTCAAGAATTCGACCAACG 193
|||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 144 ACACGCCTATGGTCAAGCCTTCAATGACGAGCCATTCCCTTTCAAGAATTCGGTCAACG 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85742530860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5