BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333357
Length=684
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29420.1 | Symbols: ATGSTU7, GST25, GSTU7 | glutathione S-tr... 998 0.0
> AT2G29420.1 | Symbols: ATGSTU7, GST25, GSTU7 | glutathione S-transferase
tau 7 | chr2:12617936-12618899 REVERSE LENGTH=887
Length=887
Score = 998 bits (540), Expect = 0.0
Identities = 619/657 (94%), Gaps = 6/657 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGAGAGATCAGAA-TCAGAGGAAGTGAAGCTTTTGGGAATGTGGGCGAGTCCTTT 59
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 29 ATGGCGGAGAGATCA-AATTCAGAGGAAGTGAAGCTTTTGGGAATGTGGGCGAGTCCTTT 87
Query 60 TAGTCGTAGGATTGAGATTGCTCTTACGCTTAAAGGTGTTTCTTACGAATT-CTCAGAGG 118
|||||| ||||||||||||||||||||||||||||||||||| || || || || |||
Sbjct 88 TAGTCGGAGGATTGAGATTGCTCTTACGCTTAAAGGTGTTTCGTATGAGTTCCT-GGAGC 146
Query 119 AAGATATCACTAACAAGAGCTCTTTGTTGCTTCAATTGAATCCGGTTTATAAGATGATTC 178
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 147 AAGATATCACAAACAAGAGCTCTTTGTTGCTTCAATTGAATCCGGTTCATAAGATGATTC 206
Query 179 CGGTTCTTGTTCATAATGGTAAACCGATTTCTGAATCACTTGTGATTCTTGAGTATATTG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 CGGTTCTTGTTCATAATGGTAAACCGATTTCTGAATCACTTGTGATTCTTGAGTATATTG 266
Query 239 ATGAGACTTGGAGAGACAATCCGATTCTGCCTCAAGATCCGTATGAGA-AAGCTATGGCT 297
|||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 267 ATGAGACTTGGAGAGACAATCCGATTCTTCCTCAAGATCCGTATGAGAGAA-CTATGGCT 325
Query 298 CGATTCTGGGCTAAATTTGTTGATGAACAGATTTATGTGACGGCGATGAAAGTGGTGGGG 357
||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 326 CGATTCTGGTCTAAATTCGTCGATGAACAGATTTATGTGACGGCGATGAAAGTTGTGGGG 385
Query 358 AAGATCGGAGAAGAGAGAGATGCGGTGGTTGAAGCGACGAGAGATTTGTTGATGTTTTTG 417
|||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 386 AAGACCGGAAAAGAGAGAGATGCTGTGGTTGAAGCGACGAGAGATTTGTTGATGTTTTTG 445
Query 418 GAGAAAGAGCTTGTTGGGAAAGAtttttttGGAGGGAGAAGTTTGGGGTTTGTAGATATT 477
||||||||||||||||||||||||||| | || |||| |||||| |||||||| ||||||
Sbjct 446 GAGAAAGAGCTTGTTGGGAAAGATTTTCTCGGTGGGAAAAGTTTAGGGTTTGTGGATATT 505
Query 478 GTGGCCACGTTGGTGGCGTTTTGGCTGATGAGGACGGAGGAGATCGTCGGAGTTAAGGTT 537
||||| || ||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 506 GTGGCGACTTTGGTGGCGTTTTGGCTGATGAGAACGGAGGAGATCGTCGGGGTAAAGGTG 565
Query 538 GTTCCGGTGGAGAAGTTCCCGGAGATACATAGATGGGTTAAGAATTTGTTGGGAAATGAT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 566 GTTCCGGTGGAGAAGTTCCCGGAGATACATAGATGGGTTAAGAATTTGTTGGGTAATGAT 625
Query 598 GTTATCAAGAAATGTATTCCTCCTGAAGATGAGCATCTCCAGTACATCAGAGCTCGT 654
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 626 GTTATCAAGAAATGTATTCCTCCTGAAGATGAGCATCTTAAGTACATTAGAGCTCGT 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33104302873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5