BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333364
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48610.1 | Symbols: | unknown protein; Has 43043 Blast hits... 1011 0.0
AT5G43490.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 787 0.0
> AT5G48610.1 | Symbols: | unknown protein; Has 43043 Blast hits
to 23768 proteins in 1327 species: Archae - 108; Bacteria
- 3952; Metazoa - 17076; Fungi - 3614; Plants - 1643; Viruses
- 204; Other Eukaryotes - 16446 (source: NCBI BLink). | chr5:19711542-19715910
FORWARD LENGTH=2538
Length=2538
Score = 1011 bits (547), Expect = 0.0
Identities = 636/679 (94%), Gaps = 6/679 (1%)
Strand=Plus/Plus
Query 36 AGAATCTTGTTACCAGATACCCGTGCCGAATAATAGTAATGGAGAGTTC-AAGTATGTAC 94
|||||| || || |||||| | |||| ||||||||||||||||||| || ||||||||||
Sbjct 887 AGAATCGTG-TAACAGATA-CGGTGCAGAATAATAGTAATGGAGAG-TCAAAGTATGTAC 943
Query 95 AGGACCTGGCAAGAAGGATCAGATATGACGAAAAAGCAACAGGAAGTCAGAGTGAACAAA 154
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 944 AGGACCTGGCAAGAAGGATCAGATATGACGAAGAAGCAACAGGAAGTCAGAGTGCACAAA 1003
Query 155 AGATTGATCATCCTAACCaaaaaaaTGTAGGAATAACAGGAAAAGCATTTGTGAACAGCC 214
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1004 GGATTGATCATCCTAACCAAAAAAATGTAGGAATAACAGAAAAAGCATTTGAGAACAGCC 1063
Query 215 CAATTGAAGAAACAAGCCATAGGGTAGATGCCAATAAGAGAATCAATACCCAAAAGAACT 274
|||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 1064 CAATTGAAGAAACAAGCCATAGGGTAGATGACAATAAGAGAATCAATAACCAGAAGAACT 1123
Query 275 TTACAGCGGCAAAAAGTTCTGAAAATGCAGTTTCTCGAGTATCATTTGGTGCTGATCAGA 334
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1124 TTACAGCGGCAAAAAGTTCTGAAAATGCAGTTTCTCGAGTATCATTTGGTGCAGATCATA 1183
Query 335 AAAGAGCTGAGGTTATGGGTAAACCAATGGAGACCAGAGACCAGATGAGGCAAACAGAAT 394
||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1184 AAAGAGCTGAGGTGATGGGTAAACCAATGGAGAACAGAGACCAGGTGAGGCAAACAGAAT 1243
Query 395 CAGCTGAGAAGATTCACTGCAAGGAAAGTGTGACCAAGAGTGATAAACCAAGGGATCaag 454
|||||||||||| |||| ||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1244 CAGCTGAGAAGAGTCACCGCAAGGAAAATGTGACCAAGAGTGAGAAACCAAGGGATCAAG 1303
Query 455 aaggggtaaagaagactgaagcaaaggataaagacagaaataaagagaagaaagaggaaa 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 AAGGGGTAAAGAAGACTGAAGCAAAGGATAAAGACAGAAATAAAGAGAAGAAAGAGGAAA 1363
Query 515 aaacagagtcaataaagaaaacttgtcaggagaaaccaaaaTTGATAGGAGGGCCCAAAT 574
|||||||||| ||||| |||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 1364 AAACAGAGTCGATAAATAAAACTCGTCAGGAGAAACCAAAATTGATACGAGGGCCCAAGT 1423
Query 575 TAGAAGAAAGAGAAAAGGACTCTCTGGATATAAGATATTGCAAACTGCCTGAGGTTTCAC 634
|||| ||||||||||||||||||| |||| ||||| ||||||| |||||||| |||||||
Sbjct 1424 TAGAGGAAAGAGAAAAGGACTCTCCGGATTTAAGAAATTGCAAGCTGCCTGACGTTTCAC 1483
Query 635 GGGCGAGCGTCAAGAACCTT-ATTACCGAGGGAAATCTTGGCAAACGGAAGGATCATATG 693
|| | ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1484 GGACAAGCATCAAGAACCTTCAC-ACCGAGGGAAATCTTGGCAAACGGAAGGATCATATG 1542
Query 694 ACAAATGGATTCTTGTATG 712
|||||||||||| ||||||
Sbjct 1543 ACAAATGGATTCCTGTATG 1561
Score = 813 bits (440), Expect = 0.0
Identities = 476/494 (96%), Gaps = 0/494 (0%)
Strand=Plus/Plus
Query 710 ATGAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTCTGTACCATCTGTGG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 ATGAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTCTGTACCATCTGTGG 1737
Query 770 AAAATGGAAGAATAATAGGTGCACCCCGAACTCCTCCAATGCCTACTTCTGAGTTGCAAG 829
|||||||||||| | ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1738 AAAATGGAAGAACATTAGGTGCACCCCGAACTCCTCCAATGCCTGCTTCTGAGGTGCAAG 1797
Query 830 GAATGACTTGCAAGCCACAAGTCAAAGAAGTTAGAATTAACGGTTTTGCTGTCTCTGGAG 889
||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1798 GAACAACTTGCAAGCCACAAGTCAAAGAAGTCAGAATTAATGGTTTTGCTGTCTCTGGAG 1857
Query 890 AAAAACATAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCAAGG 949
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 AAAAACGTAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCAAGG 1917
Query 950 AAAATGGTGAAGCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGATAC 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 AAAATGGTGAAGCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGATAC 1977
Query 1010 TCAATGTACCAACAAGGGAGCTGTTGCTGGAGGTTGATGATGACCAAGAATGGCTACTTG 1069
|| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1978 TCCATGTACCTACAAGGGAGCTGTTGCCAGAGATTGATGATGACCAAGAATGGCTACTTG 2037
Query 1070 GTCAGTCGGGTATCAAATTAAAAAAGGCGAGAACGGATCCTCCAGATTCTGGCGAATCCT 1129
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 2038 GTCAGTCGGGTATCAAATTAAAAAGGGCGAGAACAGATCCTCCAGATTCTGGCGAATCCT 2097
Query 1130 TGCAGGTCTGGAACCAAGCTTTCAGAATAGAATCTGCGGATATCGCAGCTCTTCCTTATG 1189
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 2098 TGCAGGTCTGGAACCAAGCTTTCAGAATAGAGTCTGCGGATATCACAGCTCTTCCTTATG 2157
Query 1190 TAGTTCCATTTTAG 1203
||||||||||||||
Sbjct 2158 TAGTTCCATTTTAG 2171
> AT5G43490.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:17468471-17469312
REVERSE LENGTH=614
Length=614
Score = 787 bits (426), Expect = 0.0
Identities = 474/497 (95%), Gaps = 3/497 (1%)
Strand=Plus/Plus
Query 709 TAT-GAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTCTGTACCATCTGT 767
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 119 TATGGAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTGTGTACCATCTGT 178
Query 768 GGAAAATGGAAGAATAATAGGTGCACCCCGAACTCCTCCAATGCCTACTTCTGAGTTGCA 827
||||||||||| || | ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 179 GGAAAATGGAATAACATTAGGTGCACCCCGAACTCCTCCAATGCCTGCTTCTGAGGTGCA 238
Query 828 AGGAATGACTTGCAAGCCACAAGTCAAAGAAGTTAGAATTAACGGTTTTGCTGTCTCTGG 887
||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 239 AGGAACAACTTGCAAGCCACAAGTTAAAGAAGTTAGAATTAATGGTTTTACTGTCTCTGG 298
Query 888 AGAAAAA-CATAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCA 946
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 A-AAAAAGCATAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCA 357
Query 947 AGGAAAATGGTGAAGCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGA 1006
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGGAAAATGGTGAACCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGA 417
Query 1007 TACTCAATGTACCAACAAGGGAGCTGTTGCTGGAGGTTGATGATGACCAAGAATGGCTAC 1066
||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 418 TACTCCATGTACCTACAAGGGAGCTGTTGCCAGAGATTGATGATGACCAAGAATGGCTAC 477
Query 1067 TTGGTCAGTCGGGTATCAAATTAAAAAAGGCGAGAACGGATCCTCCAGATTCTGGCGAAT 1126
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 478 TTGGTCAGTCGGGTATCAAATTAAAAAAGGCGAGAACAGATCCTCCAGATTCTGGCGAAT 537
Query 1127 CCTTGCAGGTCTGGAACCAAGCTTTCAGAATAGAATCTGCGGATATCGCAGCTCTTCCTT 1186
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 538 CCTTGCAGGTCTGGAACCAAGCTTTCAGAATAGAGTCTGCGGATATCACAGCTCTTCCTT 597
Query 1187 ATGTAGTTCCATTTTAG 1203
|||||||||||||||||
Sbjct 598 ATGTAGTTCCATTTTAG 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5