BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333369
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22390.1 | Symbols: | F-box associated ubiquitination effec... 1648 0.0
AT4G22420.1 | Symbols: | Ubiquitin-specific protease family C1... 128 1e-28
> AT4G22390.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:11813425-11815133 REVERSE LENGTH=1408
Length=1408
Score = 1648 bits (892), Expect = 0.0
Identities = 1118/1223 (91%), Gaps = 31/1223 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGAATGTCCGATGGATCTCATCAACGAGTTGTTCCTCCGTCTC-GCAGCAACTAC 59
|||||||||||||||| ||||||||||||||| |||| ||||||||| | |||||||||
Sbjct 60 ATGGCGGAATGTCCGACGGATCTCATCAACGAAATGTTTCTCCGTCTCAG-AGCAACTAC 118
Query 60 GCTTGT-ACGTTGTCGCG-CCGTCTCGAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAG 117
||| || | | ||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 119 GCTCGTAAAG-TGTCGCGTCC-TCTCAAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAG 176
Query 118 TTCATCTCATCTCATCTCCGTCGCAGACTCGAAACAGGACAACATCTCATGATCTTACTC 177
||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 177 TTCGTCTCATCTCATCTCCGTCGCAGACTCGAAACGGGAGAACATCTCATGATCTTACTC 236
Query 178 CGAGGACCTCGTCTTCTACGTACGGTGGAGCTCGACTCGCCTGAGAACGTCACCGACATC 237
|||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 237 CGAGGACCTCGTCTTCTACGCACGGTGGAGCTAGACTCGCCTGAGAACGTCTCCGACATC 296
Query 238 CCTCATCCTTTACAAGCCGGAGGTTTTACAGAGGTTTTTGGTTCCTTTAACGGTGTCATC 297
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 297 CCTCATCCTTTACAAGCCGGAGGTTTTACAGAGGTTTTTGGTTCATTTAACGGTGTCATA 356
Query 298 GGGTTATGCAACTCTCCTGTTGA-CATAGCGATTTTTAATCCTTCGAC-ACGGAAGATTC 355
|||||||| |||||||||||||| | ||||||| |||||||||||||| | |||||||||
Sbjct 357 GGGTTATGTAACTCTCCTGTTGATC-TAGCGATCTTTAATCCTTCGACTA-GGAAGATTC 414
Query 356 ATCGGTTACCAATTGAGCCACTTGATCTCCCAGAACGTCACATCACTCGTGAGTATGTGT 415
| || ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 415 ACCGTTTACCAATTGAGCCAATTGATTTCCCAGAACGTGACATCACTCGTGAGTATGTGT 474
Query 416 TTTACGGTTTGGGTTATGATTCTGTTAGCGATGACTTTAAAGTTGTGAGGAT-GCTTCAG 474
||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 475 TTTACGGTTTGGGTTATGATTCTGTGGGCGATGACTTTAAAGTTGTGAGGATTG-TTCAG 533
Query 475 TCTAAGCTTAAAGGAGGTAAAGAGAATTTTGGTTACCCTGTTGAAATCAAAGTTTTCAGC 534
| ||||||||||| ||||||| |||| ||| || |||||||||| ||||||||||||||
Sbjct 534 TGTAAGCTTAAAGAAGGTAAAAAGAAATTTCCTTGCCCTGTTGAAGTCAAAGTTTTCAGC 593
Query 535 TTGAAGAAGAATTCGTGGAAGAGAGTGTATCTTATGTTCGAGGTTCAGATTCTGTTC-AT 593
|||||||||||||||||||||||||||| ||||||||||||| |||||||||| || ||
Sbjct 594 TTGAAGAAGAATTCGTGGAAGAGAGTGTGTCTTATGTTCGAGTTTCAGATTCT-TTGGAT 652
Query 594 TTACTT-CTATTACCATCTCTTGCCTCGTCGTGGCTATGGTGTGCTAGCTAACAATCATC 652
|| | | ||||||||||||||||||||||||||||||||||||| | | |||||| ||||
Sbjct 653 TT-CGTACTATTACCATCTCTTGCCTCGTCGTGGCTATGGTGTGGTTGTTAACAACCATC 711
Query 653 TTCACTGGATTTTGCCTCGAAGGCAAGGAATCATTGCCTTTAACACGATAATCAGATTTG 712
||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| || ||
Sbjct 712 TTCACTGGATTTTGCCTCGAAGGCAGGGAGTCATTGCCTTTAACGCGATAATCAAATATG 771
Query 713 ATCTTGCCTCGGATGACCTTGGAGTCCTCAGTTTCCCACAGGATCTTTACACTGAGGATG 772
|||||||||| |||||| ||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 772 ATCTTGCCTCTGATGACATTGGAGTCCTCAGTTTCCCACAGGAGCTTTACATTGAAGATA 831
Query 773 ATATGGATGTAGGTGTGTTAGATGGCTGCGTTTGTTTGATGTGTTACGACGAGTTTAGCC 832
| |||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 832 ACATGGATATTGGTGTGTTAGATGGCTGCGTTTGTTTGATGTGTTACGACGAGTATAGCC 891
Query 833 ATGTTGATGTTTGGGTTTTGAAGGAGTATGAAGATGTA-AAATCTTGGACTAAGCTGTTT 891
|||||||||||||||||||||| |||||||| ||| || ||||||||||||||||||| |
Sbjct 892 ATGTTGATGTTTGGGTTTTGAAAGAGTATGAGGAT-TATAAATCTTGGACTAAGCTGTAT 950
Query 892 AGGGTGCCGAAACCAGAGAGTGTTGAATCGGTTGACTTCATGAGACCTCTGATCTATTCC 951
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct 951 AGGGTGCCGAAACCAGAGAGTGTTGAATCGGTTGAGTTCATTAGACCTCTGATCTGTTCC 1010
Query 952 AAGGACAGGAGCAAGATTTTACTGGAGATTAACAATGCGAAGAATCTCATGTGGTTTGAT 1011
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1011 AAGGACAGGAGCAAGATTTTGCTGGAGATTAACAATGCGGCGAATCTCATGTGGTTTGAT 1070
Query 1012 TTGGAGAGTAAGGAG-CTTACAACTGTTGGAATAAAGGCGTGTGATAGTTCATTTACTGC 1070
||||| ||| || || |||||||||| |||||| || ||||||||||||||||| ||
Sbjct 1071 TTGGAAAGTCAG-AGTCTTACAACTGCCGGAATAGAG---TGTGATAGTTCATTTACCGC 1126
Query 1071 AGACATCCTCGTGAGTAGCCTTGTTTTGGGATGTAAAGGAGATCCTACTGAAGCTCAGCG 1130
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1127 AGACATCCTCGTGAGTAGCCTTGTTTTGGGATGTAAAGGAGATCCTACTCAAGCTCAGCG 1186
Query 1131 CAGGAAAGATCA-AA--TGGTGCCGAAGAGTAAC-AAAAGG-G--ATGGTTTTCTGTCCA 1183
||| |||||||| || || |||| ||||||| | |||||| | |||||||||||||||
Sbjct 1187 CAGTAAAGATCAGAAGATGATGCCAAAGAGTA-CTAAAAGGTGGGATGGTTTTCTGTCCA 1245
Query 1184 AGGGATTCAAGCTGAAGCTATGA 1206
|||||||||||||||||||||||
Sbjct 1246 AGGGATTCAAGCTGAAGCTATGA 1268
> AT4G22420.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr4:11825614-11826432 REVERSE LENGTH=555
Length=555
Score = 128 bits (69), Expect = 1e-28
Identities = 104/120 (87%), Gaps = 6/120 (5%)
Strand=Plus/Plus
Query 1 ATGGCGGAATGTCCGATGGATCTCATCAACGAGTTGTTCCTCCGTC-TCGCAGCAACTAC 59
|||||||||||||||| ||||||||||||||| |||| ||||||| | | |||||||||
Sbjct 1 ATGGCGGAATGTCCGACGGATCTCATCAACGAAATGTTTCTCCGTCTTAG-AGCAACTAC 59
Query 60 GCT-TGTACGTTGTCGCG-CCGTCTCGAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAG 117
||| | | ||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 60 GCTCAAAAAG-TGTCGCGTCC-TCTCAAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAG 117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5