BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333370
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22390.1 | Symbols: | F-box associated ubiquitination effec... 1685 0.0
AT4G22420.1 | Symbols: | Ubiquitin-specific protease family C1... 161 1e-38
> AT4G22390.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:11813425-11815133 REVERSE LENGTH=1408
Length=1408
Score = 1685 bits (912), Expect = 0.0
Identities = 1116/1214 (92%), Gaps = 16/1214 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGAATGTCCGACGGATATCATCAACGAGTTGTTCCTCCGTCTCAGAGCAACTACG 60
||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct 60 ATGGCGGAATGTCCGACGGATCTCATCAACGAAATGTTTCTCCGTCTCAGAGCAACTACG 119
Query 61 CTTGTAAAGTGTCGCGTCGTCTCGAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAGTTC 120
|| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 CTCGTAAAGTGTCGCGTCCTCTCAAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAGTTC 179
Query 121 ATCTCCTCTCATCTCCGTCGCAGACTCGAAACGGGAGAACATCTCATGATCTTACTCCGA 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTCTCATCTCATCTCCGTCGCAGACTCGAAACGGGAGAACATCTCATGATCTTACTCCGA 239
Query 181 GGACCTCGTCTTCTACGTACGGTGGAGCTCGACTCGCCTGAGAACGTCTCCGACATCCCT 240
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 GGACCTCGTCTTCTACGCACGGTGGAGCTAGACTCGCCTGAGAACGTCTCCGACATCCCT 299
Query 241 CATCCTTTGCAAGCCGGAGGTTTTACCGAGGTTTTTGGTTCCTTTAACGGTGTCATCGGG 300
|||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 300 CATCCTTTACAAGCCGGAGGTTTTACAGAGGTTTTTGGTTCATTTAACGGTGTCATAGGG 359
Query 301 TTATGCAACTCTCCCGTTGA-CATAGCGATTTTTAATCCTTCGAC-ACGGAAGATTCATC 358
||||| |||||||| ||||| | ||||||| |||||||||||||| | |||||||||| |
Sbjct 360 TTATGTAACTCTCCTGTTGATC-TAGCGATCTTTAATCCTTCGACTA-GGAAGATTCACC 417
Query 359 GGTTACCGATTGAGCCACTTGATTTCCCAGAACGTCACATCACTCGTGAGTATGTGTTTT 418
| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 418 GTTTACCAATTGAGCCAATTGATTTCCCAGAACGTGACATCACTCGTGAGTATGTGTTTT 477
Query 419 ACGGTTTGGGTTATGATTCTGTGAGCGATGACTATAAAGTGGTGAGGATGGTTCAGTCTA 478
||||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||| ||
Sbjct 478 ACGGTTTGGGTTATGATTCTGTGGGCGATGACTTTAAAGTTGTGAGGATTGTTCAGTGTA 537
Query 479 AGCCTAAAGGAGGTAAAAAGAATTTTGGTTG--C-ATTGAAATCAAAGTTTTTAGCTTGA 535
||| ||||| |||||||||||| ||| ||| | ||||| |||||||||| |||||||
Sbjct 538 AGCTTAAAGAAGGTAAAAAGAAATTTCCTTGCCCTGTTGAAGTCAAAGTTTTCAGCTTGA 597
Query 536 AGAAGAATTCGTGGAAGAGAGTGTGTCTTATGTTCGAGGTTCAGATTCTTTTCA-TTCAC 594
|||||||||||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 598 AGAAGAATTCGTGGAAGAGAGTGTGTCTTATGTTCGAGTTTCAGATTCTTTGGATTTC-G 656
Query 595 TACTATTACCATCTCTTGCCTCGTCGTGGTTATGGCGTTCTAGCTAACAATCATCTTCAC 654
||||||||||||||||||||||||||||| ||||| || | | |||||| |||||||||
Sbjct 657 TACTATTACCATCTCTTGCCTCGTCGTGGCTATGGTGTGGTTGTTAACAACCATCTTCAC 716
Query 655 TGGATTTTGCCTCGAAGGCAAGGAATCATCGCCTTTAATGCGATAATCAGATTTGATCTT 714
|||||||||||||||||||| ||| |||| |||||||| |||||||||| || |||||||
Sbjct 717 TGGATTTTGCCTCGAAGGCAGGGAGTCATTGCCTTTAACGCGATAATCAAATATGATCTT 776
Query 715 GCTTCTGATGACCTTGGAGTCCTCAGTTTCCCACGGGCTCTTTACACTGAAGATGATATG 774
|| ||||||||| ||||||||||||||||||||| || ||||||| ||||||| | |||
Sbjct 777 GCCTCTGATGACATTGGAGTCCTCAGTTTCCCACAGGAGCTTTACATTGAAGATAACATG 836
Query 775 GATATTGGTGTGTTAGATGGCTGCGTTTGTTTGATGTGTTACGACAAGTTTAGCCATGTT 834
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 837 GATATTGGTGTGTTAGATGGCTGCGTTTGTTTGATGTGTTACGACGAGTATAGCCATGTT 896
Query 835 GATGTTTGGGTTCTGAAGGAGTATGAAGATTGGAAATCTTGGACTAAGCTGTTTAGGGTG 894
|||||||||||| |||| |||||||| |||| ||||||||||||||||||| |||||||
Sbjct 897 GATGTTTGGGTTTTGAAAGAGTATGAGGATTATAAATCTTGGACTAAGCTGTATAGGGTG 956
Query 895 CCGAAACCAGAGAGCGTTGAATCGGTTGACTTCATGAGACCTATGGTGTATTCCAAGGAC 954
|||||||||||||| |||||||||||||| ||||| |||||| || | | ||||||||||
Sbjct 957 CCGAAACCAGAGAGTGTTGAATCGGTTGAGTTCATTAGACCTCTGATCTGTTCCAAGGAC 1016
Query 955 AGGAGCAAGATTTTGCTGGAGATTAACAATGCGGCGAATCTCATGTGGTTTGATTTGGAA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGGAGCAAGATTTTGCTGGAGATTAACAATGCGGCGAATCTCATGTGGTTTGATTTGGAA 1076
Query 1015 AGTAAGAGTCTTACAACTGTTGGAATAGAGTGTGATAGTTCATTTACCGCAGACATCCTC 1074
||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AGTCAGAGTCTTACAACTGCCGGAATAGAGTGTGATAGTTCATTTACCGCAGACATCCTC 1136
Query 1075 GTGAGTAGCCTTGTTTTGGGATGTAAAGGAGATCCTAC-CAAAGCTCAGCGCAGGAAAGA 1133
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 1137 GTGAGTAGCCTTGTTTTGGGATGTAAAGGAGATCCTACTCAA-GCTCAGCGCAGTAAAGA 1195
Query 1134 TCA-AA--TGATGCCGAAGAGTAAC-AAAAGGTGGGATGGTTTTCTGGCCAAGGGATTCA 1189
||| || ||||||| ||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 1196 TCAGAAGATGATGCCAAAGAGTA-CTAAAAGGTGGGATGGTTTTCTGTCCAAGGGATTCA 1254
Query 1190 AGCTGAAGCTATGA 1203
||||||||||||||
Sbjct 1255 AGCTGAAGCTATGA 1268
> AT4G22420.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr4:11825614-11826432 REVERSE LENGTH=555
Length=555
Score = 161 bits (87), Expect = 1e-38
Identities = 107/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGAATGTCCGACGGATATCATCAACGAGTTGTTCCTCCGTCTCAGAGCAACTACG 60
||||||||||||||||||||| |||||||||| |||| |||||||| ||||||||||||
Sbjct 1 ATGGCGGAATGTCCGACGGATCTCATCAACGAAATGTTTCTCCGTCTTAGAGCAACTACG 60
Query 61 CTTGTAAAGTGTCGCGTCGTCTCGAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAG 117
|| ||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 61 CTCAAAAAGTGTCGCGTCCTCTCAAAGCCTTGCTTCTCTTTGATCGACAGTCCCGAG 117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5