BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333373
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21481.1 | Symbols: | Pseudogene of AT4G34870; ROC5 (ROTAMA... 326 2e-88
> AT3G21481.1 | Symbols: | Pseudogene of AT4G34870; ROC5 (ROTAMASE
CYP 5); peptidyl-prolyl cis-trans isomerase | chr3:7572232-7572483
REVERSE LENGTH=252
Length=252
Score = 326 bits (176), Expect = 2e-88
Identities = 228/252 (90%), Gaps = 8/252 (3%)
Strand=Plus/Plus
Query 40 GCTAATCCTAAAG-tttttttttATTTG-GCCGTGGACGGCAGACTGGCTGGTCGGATCG 97
||||||||||||| |||||||||||||| | ||||||| ||||| | | ||||||||| |
Sbjct 1 GCTAATCCTAAAGTTTTTTTTTTATTTGAG-CGTGGACAGCAGAGT-G-TGGTCGGATTG 57
Query 98 TGATTGAGCTCTTTGCAGATACGACCCCGCGAACGGCAGAGAACTTCCGGGCCCTATGTA 157
|||| |||||||||||||| ||||| || ||| |||| ||||| ||||||||||||||||
Sbjct 58 TGATGGAGCTCTTTGCAGACACGACACCACGAGCGGCGGAGAATTTCCGGGCCCTATGTA 117
Query 158 C-CGGGGAGAAAGGGATGGGGAAGCTTGGTAAGCCACTCCACTACAAGGGATCAATCTTC 216
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CACAGGGAGAAAGGGATGGGGAAGCTTGGTAAGCCACTCCACTACAAGGGATCAATCTTC 177
Query 217 CACCGTCTTGTCCCCTA-TCAAATGTTCTGTGGAGGAGATATCACTGCTGGTAATGGAAG 275
|||||||||| || || |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 178 CACCGTCTTGAACC-TAATCAAATGTTCTGTGGAGGAGATTTCACTGCTGGTGATGGAAG 236
Query 276 TGGAGGCGAATG 287
|||||||||||
Sbjct 237 CGGAGGCGAATG 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26925502792
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5