BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333377
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22770.1 | Symbols: | F-box associated ubiquitination effec... 268 6e-71
AT3G19470.1 | Symbols: | F-box and associated interaction doma... 263 3e-69
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 233 2e-60
AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | ch... 183 2e-45
AT3G23420.1 | Symbols: | F-box and associated interaction doma... 180 3e-44
AT5G36200.1 | Symbols: | F-box and associated interaction doma... 150 2e-35
AT3G17400.1 | Symbols: | F-box family protein | chr3:5954887-5... 117 2e-25
AT2G04730.1 | Symbols: | pseudogene, F-box protein-related, co... 75.0 1e-12
AT5G36730.1 | Symbols: | F-box and associated interaction doma... 62.1 1e-08
AT5G36820.1 | Symbols: | F-box and associated interaction doma... 62.1 1e-08
AT3G22421.1 | Symbols: | F-box and associated interaction doma... 54.7 2e-06
> AT3G22770.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8047684-8048667 REVERSE LENGTH=984
Length=984
Score = 268 bits (145), Expect = 6e-71
Identities = 374/480 (78%), Gaps = 34/480 (7%)
Strand=Plus/Plus
Query 576 TTTCTTAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCATTTGTCTATGCCGTA 635
||||||| ||| ||||||||| ||||| |||| ||||||||| | |||| || | ||||
Sbjct 531 TTTCTTACTCTCTTTTGATTTCACAAGAGAGACATTTGGACCACTTTTGCCTCTTCCGTT 590
Query 636 TGAG-TTG-T-ATTTTGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGC 692
| || ||| | | | ||||| | || |||| |||| | ||| | ||| |||||||||||
Sbjct 591 TCAGTTTGTTGAATCTGAAGATGCTTTGAGTGTATCCAATGTTAGAGACGAGCAGCTTGC 650
Query 693 AGTTTTGTTTCA-ACGTTGGGATACATTAGA-GATAGAAATATGGATTACGACTAAGATT 750
||||| | ||| || |||||||||||| | ||| || || ||| | ||| ||||||||
Sbjct 651 TGTTTTATATCAGCCG-TGGGATACATTA-ATGATGGAGATCTGGGTCACGTCTAAGATT 708
Query 751 GAGCCCAACGCGGTGTCTTGGAACAGCAAGGTGTTCTTAGCCGTGAATATGAGATCATTC 810
||||||||||||||||||||||||||||||||||||||| | |||| ||| ||| | ||
Sbjct 709 GAGCCCAACGCGGTGTCTTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAGAAAACTC 768
Query 811 ACTTG-CTTTGACTTTCAGTTTTTGCTCACACATGCG-AGTTTCTTCATTGACAAGGAGA 868
| ||| | | | |||||||||| | | || | ||||||||||||||| ||||||
Sbjct 769 A-TTGGCCCTCAGTTTCAGTTTT-GTT------TGGGGAGTTTCTTCATTGACGAGGAGA 820
Query 869 AGAAAGTCGCCGTAGTGTTTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCACCG 928
|||||||||| || || ||||||||| | | | | || || | | | | ||
Sbjct 821 AGAAAGTCGCTGTTGTTTTTGATAAAGGCTAC-A--G-AA--TACAGCGC--TA-CA--- 868
Query 929 TAGCTTACATCGTTGGAGTGGATGGATCCTTGAAAAAAGCCGATCTTGGAGAATATGGAG 988
||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||| ||
Sbjct 869 TAGCTTACATCATTGGAGTGGATGGATCCATGAAAGAAGTGGATCTTGGAGAATC---AG 925
Query 989 ACA-AACATTGTTATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAACTTAATTAG 1047
||| || | |||| ||| ||||||| ||||||||||||||| |||| ||||||||||||
Sbjct 926 ACAGAAGGT-GTTACCCAATTGTGTGGTCTTATGTTCCAAGTCTAGTGCAACTTAATTAG 984
Score = 202 bits (109), Expect = 6e-51
Identities = 247/310 (80%), Gaps = 23/310 (7%)
Strand=Plus/Plus
Query 229 GAAGTAGATG-TA-A-CTCGAGT-TGTTCACTGCGACGGTTTATTGTTATGCATCA-C-T 282
||||| |||| || | ||| ||| | |||||||||||||||||||||||||||||| | |
Sbjct 133 GAAGTTGATGATATATCTCAAGTCT-TTCACTGCGACGGTTTATTGTTATGCATCAGCAT 191
Query 283 -A---AAGACTACACTAAGTTCGTGGTTTGTAACCCGTATTTGGGGCAAACCCGGTGGAT 338
| ||| | | |||| | |||||||||| |||||||||| |||||| ||||||| ||
Sbjct 192 CACCCAAGCCAAGACTAGGCTCGTGGTTTGGAACCCGTATTGGGGGCATACCCGGTCAAT 251
Query 339 CGTGTCCC-CACATAAATTCAACAGATTTGACTTG-TATACGAATGCTCTCGGATACGAC 396
|| | ||| ||||| | ||||||| ||| ||| | ||| | |||||||||||||||||
Sbjct 252 CGAG-CCCACACATCAGTTCAACAAATTCGACA-GCTATTCTTATGCTCTCGGATACGAC 309
Query 397 AAGAGTAGCAAATCCTACAAAATCTTGATATTTGTTGATTTCTTTTATCCCCCTGCTACT 456
||||| ||||||||| |||||||||||| | | || | || ||| | |||| | |
Sbjct 310 AAGAGCAGCAAATCCCACAAAATCTTGAGGTGTATT-ACTTGTTTGAGACCCC----A-T 363
Query 457 TTTGTTGAGTACAAAATCTATGACTTTAACTCTGATTCATGGAGGGTTAT-CGATGTCAC 515
||| ||||| || |||||| || ||||||||| |||||||||||||| | | |||||||
Sbjct 364 TTTCATGAGTTCATAATCTACGATTTTAACTCTAATTCATGGAGGGTTTTTC-ATGTCAC 422
Query 516 TCCAGACTGG 525
||||||||||
Sbjct 423 TCCAGACTGG 432
> AT3G19470.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6749524-6751014 FORWARD LENGTH=1388
Length=1388
Score = 263 bits (142), Expect = 3e-69
Identities = 371/478 (78%), Gaps = 30/478 (6%)
Strand=Plus/Plus
Query 576 TTTCTTAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCATTTGTCTATGCCGTA 635
||||||| ||||||||||||| |||||||||| |||||| |||| |||| || | ||||
Sbjct 835 TTTCTTACTCTGTTTTGATTTCACAAGCGAGACATTTGGGCCGCCTTTGCCTCTTCCGTT 894
Query 636 TGAG-TTG-TATTT-TGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGC 692
|||| ||| | ||| ||||| |||| |||| |||||||||| | ||||||||||||||
Sbjct 895 TGAGTTTGCTGTTTCTGAAGATACTATGAGTGTATCTAGTGTTAGAGAAGAGCAGCTTGT 954
Query 693 AGTTTTGTTTCA-ACGTTGGGA-TACATTAGAGATAGAAATATGGATTACGACTAAGATT 750
|| || | ||| || ||||| || ||| || | || || ||| | ||| ||||||||
Sbjct 955 TGTATTATATCAGCCG-TGGGATTA-TTTACAGTTGGACATCTGGGTGACGTCTAAGATT 1012
Query 751 GAGCCCAACGCGGTGTCTTGGAACAGCAAGGTGTTCTTAGCCGTGAATATGAGATCATTC 810
||||||||||| ||||| ||||||||||||||||||||| | |||| | | | | ||
Sbjct 1013 GAGCCCAACGCTGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGT-TTAAAACA--- 1068
Query 811 ACTTGCTTTGACTTTCAGTTTTTGCTCACACATGCGAGTTTCTTCATTGACAAGGAGAAG 870
||| | | | | ||||||| | | || || |||||||||||| ||| ||||||||
Sbjct 1069 ACTCG-TCAG-CCCTCAGTTTCAGTTAACTTTTGGGAGTTTCTTCATCGACGAGGAGAAG 1126
Query 871 AAAGTCGCCGTAGTGTTTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCACCGTA 930
|||||||| || || ||||||||| || ||| | | || | |||| | ||
Sbjct 1127 AAAGTCGCTGTGGTTTTTGATAAAGAC----TACG--A--T-AA---TAAGCGCAACATA 1174
Query 931 GCTTACATCGTTGGAGTGGATGGATCCTTGAAAAAAGCCGATCTTGGAGAATATGGAGA- 989
||||||||| ||||||||||||||||||| ||| || ||||| |||| || | |||
Sbjct 1175 GCTTACATCTTTGGAGTGGATGGATCCTTTAAAGCAGTTGATCTCGGAG-AT-T-CAGAC 1231
Query 990 CAAACATTGTTATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAACTTAATTAG 1047
| || | |||| |||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1232 CGAA-AGTGTTTTCCACTTGTGTGCTCTTATGTTCCAAGTCTAGTGCAACTTAATTAG 1288
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 233 bits (126), Expect = 2e-60
Identities = 364/474 (77%), Gaps = 36/474 (8%)
Strand=Plus/Plus
Query 573 TACTTTCTTAATCTGTTTTGATTTTACAAGCGAGAGATTT-GGACCGCATTTGTCTATGC 631
|||||||||| ||||||||||||| ||||| ||||||||| || ||| ||| || |||
Sbjct 678 TACTTTCTTAGTCTGTTTTGATTTCACAAGAGAGAGATTTAGG-TCGCGTTTACCTCTGC 736
Query 632 CGTA-TGAG--TTGTATTTTGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGC 688
|| | | || ||| |||| || ||| | ||||||||||||||| | |||||||||||
Sbjct 737 CG-AGTCAGCCGTGTGTTTT--AGATACCGTGAGTCTATCTAGTGTTAGAGAAGAGCAGC 793
Query 689 TTGCAGTTTTGTTTCAACG-TTGGGATACATTAGAGATAG-AAATATGGATTACGACTAA 746
|||| ||||| ||||| | | | |||||| ||||| | | || ||| | || || ||
Sbjct 794 TTGCTGTTTTATTTCAGTGCTCAAG-TACATTGGAGAT-GCAGATCTGGGTAACAACCAA 851
Query 747 GATTGAGCCCAACGCGGTGTCT-TGGAACAGCAAGGTGTTCTTAGCCGTGAATATGAGAT 805
||||||||||| ||||||| | |||||||||||||||||||||| | || || |||
Sbjct 852 AATTGAGCCCAATGCGGTGT-TGTGGAACAGCAAGGTGTTCTTAG-C-TG----TG-GAT 903
Query 806 CATTCACTTGCTTTGACTTTCAGTTT-TTGCTCACA-CATGCGAGTTTCTTCATTGACAA 863
|| |||| | || | ||||||||| | | | | | | |||||||||| || ||| |
Sbjct 904 -ATGCACTCAC-TTAAGTTTCAGTTTCAAG-TTAGAGC-TTCGAGTTTCTTTATCGACGA 959
Query 864 GGAGAAGAAAGTCGCCGTAGTGTTTGATAAAAACAAAGAACGCAACGTAAAC-CCCACTC 922
|||||||| ||| | || || |||||| ||| ||| |||| | | | | || |||
Sbjct 960 GGAGAAGAGAGTTGTTGTTGTTTTTGAT--AAAGAAA-AACGTTA-TTTAGCGTCCTCTC 1015
Query 923 GCACCGTAGCTTACATCGTTGGAGTGGATGGATCCTTGAAAAAAGCCGATCTTGGAGA-A 981
||| | ||||||||||||||||||||||||| ||| | || ||| || |||||| |
Sbjct 1016 GCAACAAAGCTTACATCGTTGGAGTGGATGGAACCTGGGAACAAGTGGACCTTGGA-ATG 1074
Query 982 TATGGAGACAAACATTG-TTATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGT 1034
| || ||||||| ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1075 TCTGTAGACAAA-TTTGTTTACCCACTTGTGTGCTCTTATGTTCCAAGTTTAGT 1127
> AT5G28527.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10513366-10514577 FORWARD LENGTH=1212
Length=1212
Score = 183 bits (99), Expect = 2e-45
Identities = 245/312 (79%), Gaps = 23/312 (7%)
Strand=Plus/Plus
Query 212 GCCTAGACGATTCAGT-TGAAGTAGATGTAACTCGAGTTGTTCACTGCGACGGTTTATTG 270
|||||||||||||| | |||||| | ||| || |||| ||||||||||||||||||||
Sbjct 333 GCCTAGACGATTCA-TATGAAGTCCAAGTATCTAAAGTTTTTCACTGCGACGGTTTATTG 391
Query 271 TTATGCATCACTAAAGACTACACTAAGTTCGTGGTTTGTAACCCGTATTTGGGG-CAAAC 329
|||||||| || |||||| | |||||| || | ||||| |||||||||| |||| |||||
Sbjct 392 TTATGCATTACAAAAGACCATACTAAGCTCCTAGTTTGGAACCCGTATT-GGGGTCAAAC 450
Query 330 CCGGTGGATCGTGTCCCC-ACATAAATTCA-AC-AGATTTGACTTGTATACGAATGCTCT 386
| |||||||| ||| ||||| |||| || | | | || |||||| || |||| |
Sbjct 451 CAAGTGGATCGAA-CCCATACATAC-TTCATACCA-ACTGGAATTGTATTCGTATGCGAT 507
Query 387 CGGATACGACAAGAGTAGCAA-ATCCTACAAAATCTTGATATTTG-TTGATTTCTT-TTA 443
|||||||||||||| ||| | | ||||||||||||| ||| |||||| | | |||
Sbjct 508 TGGATACGACAAGAGCAGCCGCAGC-TACAAAATCTTGAG-TTTCCTTGATT-CATATTA 564
Query 444 TCCCCCTGCTACTTTTGTTGAGTA-CAAAATCTATGACTTTAACTCTGATTCATGGAGGG 502
||| |||| |||||||| || ||||||||| || | |||||||| |||||||||||
Sbjct 565 -CCCAA--CTACCTTTGTTGA-TATCAAAATCTACGAGTGTAACTCTGGTTCATGGAGGG 620
Query 503 TTA-TCGATGTC 513
| | | ||||||
Sbjct 621 T-ACTTGATGTC 631
> AT3G23420.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8386273-8387324 REVERSE LENGTH=858
Length=858
Score = 180 bits (97), Expect = 3e-44
Identities = 214/266 (80%), Gaps = 25/266 (9%)
Strand=Plus/Plus
Query 251 TTCACTGCGACGGTTTATTGTTATGCATCACT-AAAGACTACACTAAG-TTCGTGGTTTG 308
|||||||||||||||||||||||||||||| | |||||| || ||| | || ||||||||
Sbjct 290 TTCACTGCGACGGTTTATTGTTATGCATCA-TGAAAGACAACCCTAGGCTT-GTGGTTTG 347
Query 309 TAACCCGTATT-TGGGGCAAACCCGGTGGATCGTGTCCCCACATAAAT--TCAACAGATT 365
|||||||||| ||| |||||||||||||||| | | || |||| | ||| |||||
Sbjct 348 TAACCCGTATAGTGGA-CAAACCCGGTGGATCGAGACTACAAATAA-TCCTCAG-AGATT 404
Query 366 TGACTTGTATA--CGAATGCTCTCGGATACGACAAG-AGTAGCAAATCCTACAAAATCTT 422
|| | | ||| || |||||||||||||| | | | |||| ||||||| ||||||||||
Sbjct 405 AGA-T-GCATATTCGTATGCTCTCGGATACAATA-GCAGTACCAAATCCCACAAAATCTT 461
Query 423 GA-TATTTG-T-TGATTTCTT--TTATCCC-CCTGCTACTTTTGTTGAGTACAAAATCTA 476
|| | |||| | |||| | || |||| | ||| | |||| || ||||| |||||||||
Sbjct 462 GAGT-TTTGGTATGATGT-TTGATTATGTCTCCTCC-ACTTCTGCTGAGTTCAAAATCTA 518
Query 477 TGACTTTAACTCTGATTCATGGAGGG 502
|||||||||||||| ||||||||||
Sbjct 519 CGACTTTAACTCTGACTCATGGAGGG 544
> AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14244106-14246296 REVERSE LENGTH=1416
Length=1416
Score = 150 bits (81), Expect = 2e-35
Identities = 351/474 (74%), Gaps = 48/474 (10%)
Strand=Plus/Plus
Query 577 TTCTTAATCTGTTTTGATTTTACAAGC-GAGAGATTTGGACCGCAT-TTGTCTATGCCGT 634
||||| ||||||||||| ||||||| | |||||||||||||||| | || | |||| |
Sbjct 724 TTCTTGATCTGTTTTGACTTTACAA-CAGAGAGATTTGGACCGCGTCTTCAC-CTGCCCT 781
Query 635 ATGAGTTGT-ATTTTGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCA 693
| | | | ||| ||| | ||||| || ||| |||||||| | |||||| ||||||||
Sbjct 782 TTCA-CTCTCATTCTGATGATACTGTGATTCTCTCTAGTGTTAGAGAAGAACAGCTTGCG 840
Query 694 GTTTTGTTTCAA-CG-TTGGGATACATTAGA-GATAGAAATATGGATTACGACTAAGATT 750
|| ||| || || || || ||| | | || ||| || || ||| ||||||||||||||
Sbjct 841 GTGTTGATT-AAGCGCTT-CGATTTA-TGGAGGATGGAGATTTGGGTTACGACTAAGATT 897
Query 751 GAGCCCAACGCGGTGTCTTGGAACAGCAAGGTGTTCTTAGCCG-TGAATATGAGATCA-T 808
||||| || | ||| || ||| | | |||| |||||||||| | || |||||| | || |
Sbjct 898 GAGCCTAAGGAGGTCTCATGG-A-A-CAAGTTGTTCTTAGCGGTTG-ATATGATACCACT 953
Query 809 --TCACTTGCTTTGACTTTCAGTTTTTGCTCACACATGCGAGTTTCTTCATTGACAAGGA 866
|||| ||| | |||||| ||||| | | ||| |||||| ||||||||| || |
Sbjct 954 GATCAC-TGC--T---TTTCAG-TTTTG-T---A-ATGTGAGTTTTTTCATTGACGAGAA 1001
Query 867 GAAGAAAGTCGCCGTAGTGT-TTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCA 925
|||||| |||| ||| || | ||| |||| | | | || | | || || |
Sbjct 1002 GAAGAATGTCGTCGTGGT-TCTTGGTAAAGA-TGTG-TTG-AA--T--A---CA--CGAA 1048
Query 926 CCGTAGCTTACATCGTTGG-AGTGGATGGATCCTTGAAAAAAGCCGATCTTGGAGAATAT 984
| ||||| | || |||| | | ||||||| ||| ||| ||| ||||||||||||| |
Sbjct 1049 ACATAGCTAATATTATTGGAAAT-GATGGATACTTTAAACAAGTGGATCTTGGAGAATCT 1107
Query 985 GGAGACAAACATTGTTATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAA 1038
| ||||| ||||||| |||||||||||||||||||||||||||| ||| |||
Sbjct 1108 ACAAACAAATATTGTTACCCACTTGTGTGCTCTTATGTTCCAAGTTCAGTGCAA 1161
> AT3G17400.1 | Symbols: | F-box family protein | chr3:5954887-5955444
FORWARD LENGTH=558
Length=558
Score = 117 bits (63), Expect = 2e-25
Identities = 97/113 (86%), Gaps = 4/113 (4%)
Strand=Plus/Plus
Query 11 TGTCCAATCTTCCAAGGGATTTGGCGATA-GAGGTGCTCTCT-AGAATTCCGTTGACATC 68
||||| |||||||||| |||||||| | | ||||| || ||| || |||||| |||||||
Sbjct 11 TGTCCGATCTTCCAAGTGATTTGGC-AGAGGAGGTTCTGTCTAAG-ATTCCGGTGACATC 68
Query 69 TCTGAGAATAATCGGATCTACTTGCAAAAAGTGGAACACTTTATCCAAAGATC 121
||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 69 TCTGAGAGGGGTCAGAGCTACTTGCAAAAAGTGGAACACTTTATCCAAAGATC 121
> AT2G04730.1 | Symbols: | pseudogene, F-box protein-related,
contains TIGRFAM TIGR01640 : F-box protein interaction domain;
similar to F-box protein family, AtFBX9 (GI:20197985) (Arabidopsis
thaliana) | chr2:1654500-1655699 REVERSE LENGTH=1200
Length=1200
Score = 75.0 bits (40), Expect = 1e-12
Identities = 97/123 (79%), Gaps = 10/123 (8%)
Strand=Plus/Plus
Query 581 TAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCATT-TGTCTATGCCGTATGA- 638
||||||||||||||||||||||||||||||||||||||| || || || | |||| | |
Sbjct 705 TAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGC-TTCTGCCTCTACCGT-TAAA 762
Query 639 -GTTG--TATTTTGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGCAGT 695
| || |||| || | | || || | ||||| ||| ||||||||| ||||||| ||
Sbjct 763 CGCTGAGTATTATGGCG--A-TGTGATTTTATCTTCTGTTAAAGAAGAGAAGCTTGCGGT 819
Query 696 TTT 698
|||
Sbjct 820 TTT 822
> AT5G36730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14436317-14437549 FORWARD LENGTH=1233
Length=1233
Score = 62.1 bits (33), Expect = 1e-08
Identities = 73/91 (80%), Gaps = 7/91 (8%)
Strand=Plus/Plus
Query 251 TTCACTGCGACGGTTTATTGTTATGCATCACTAAAGACTACACTAAG-TTCGTGGTTTGT 309
||||||||||||||||||||||||||||||||| | | | | | || |||||||||
Sbjct 335 TTCACTGCGACGGTTTATTGTTATGCATCACTATTGGG-AT-C-AGGCTT-GTGGTTTGT 390
Query 310 AACCCGTATT-TGGGGCAAACCCGGTGGATC 339
|| || |||| |||| ||||| |||| |||
Sbjct 391 AATCCTTATTGTGGG-CAAACAAGGTGTATC 420
> AT5G36820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14495617-14496849 FORWARD LENGTH=1233
Length=1233
Score = 62.1 bits (33), Expect = 1e-08
Identities = 73/91 (80%), Gaps = 7/91 (8%)
Strand=Plus/Plus
Query 251 TTCACTGCGACGGTTTATTGTTATGCATCACTAAAGACTACACTAAG-TTCGTGGTTTGT 309
||||||||||||||||||||||||||||||||| | | | | | || |||||||||
Sbjct 335 TTCACTGCGACGGTTTATTGTTATGCATCACTATTGGG-AT-C-AGGCTT-GTGGTTTGT 390
Query 310 AACCCGTATT-TGGGGCAAACCCGGTGGATC 339
|| || |||| |||| ||||| |||| |||
Sbjct 391 AATCCTTATTGTGGG-CAAACAAGGTGTATC 420
> AT3G22421.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7949116-7950396 REVERSE LENGTH=1281
Length=1281
Score = 54.7 bits (29), Expect = 2e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1007 TTGTGTGCTCTTATGTTCCAAGTTTAGTTCAA 1038
|||||||||||||||||||||||||||| |||
Sbjct 1100 TTGTGTGCTCTTATGTTCCAAGTTTAGTGCAA 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51339298234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5