BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333379

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43660.2 | Symbols:  | Carbohydrate-binding X8 domain superf...   268    1e-71


> AT2G43660.2 | Symbols:  | Carbohydrate-binding X8 domain superfamily 
protein | chr2:18103751-18104569 REVERSE LENGTH=463
Length=463

 Score =  268 bits (145),  Expect = 1e-71
 Identities = 171/184 (93%), Gaps = 0/184 (0%)
 Strand=Plus/Plus

Query  90   GGTTGTGTCGAAAGGAGGTACATGTTATGATCCAATTAATCTCTATAATTCAGCTTCTGT  149
            |||||| ||| |||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct  213  GGTTGTATCGGAAGGAGGTGCCTGTTATGATCCGATTAATCTCTATAATTCAGCTTCTGT  272

Query  150  CGCCATGAATCTTTATTACCAAAATCAAGGAAGACACTATTCAAAATGCGATTTCGAAGG  209
            || ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  273  CGTCATGAATCTTTATTACCAAAATCAAGGAAGACAGTATTCGAAATGCGATTTCGAAGG  332

Query  210  CTCTGGTATAATTACCGTAACTGATCCTAGTTGTGGATGTTGCATATATGAATTTTATAA  269
            |||||||||||||| ||||||||||||||||| || |||||||||||||||||||  |||
Sbjct  333  CTCTGGTATAATTAGCGTAACTGATCCTAGTTATGAATGTTGCATATATGAATTTGCTAA  392

Query  270  GTAA  273
            ||||
Sbjct  393  GTAA  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12516669501


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5