BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333380

Length=972
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13060.1 | Symbols:  | F-box associated ubiquitination effec...   435    5e-121


> AT4G13060.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr4:7619935-7620942 REVERSE LENGTH=1008
Length=1008

 Score =  435 bits (235),  Expect = 5e-121
 Identities = 355/412 (86%), Gaps = 11/412 (3%)
 Strand=Plus/Plus

Query  467  TGAGATTGAAGGAGATCATTATGAGTTTTGATGTGAGGTCTGAACAGTTCAAATCAATCC  526
            ||||| ||||| | || ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct  521  TGAGAGTGAAGCATATTATTATGAGTTTTGATGTGAGGTCTGAAAAGTTCAAATCAATTC  580

Query  527  AAATACCTGGTCGTAAATTCCAATATG-AGTCGATGCT-TGA-AGAATCTCTAATGTGTT  583
            |||||||| || ||     |||||||| | |  ||| | | | | ||||||||||| |||
Sbjct  581  AAATACCTAGTAGTGGGCACCAATATGAACT-AATG-TGTTATA-AATCTCTAATGAGTT  637

Query  584  ACCAAGGAAAAGTAGCATGGATTTGCTATAATTCAAATATTATCAAATTATGGGTTTTGA  643
            || |||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| 
Sbjct  638  ACAAAGGAAAATTAGCATGGGTTTGCTGTAATTCAAATATTATCAAATTATGGGTTTTGT  697

Query  644  AGGATGCTGAAAAACAAGTATGGTCAGAAAATGAATTTGTTTTACC---TTTGCCTCAAA  700
             |||||||| |||||||| |||||||||||||||||||||||||||   |||||||||||
Sbjct  698  TGGATGCTGGAAAACAAGAATGGTCAGAAAATGAATTTGTTTTACCTAGTTTGCCTCAAA  757

Query  701  GAGATTTGCCTCGGAATGCTTGGTTACGTGGTGCCACTAGTACTGGTGAGTTTATCTATG  760
            ||||||||| | ||| |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  758  GAGATTTGCTTGGGAGTGCTAGGTTAAGTGGTGCCACTAGTACTGGTGAGTTTATCTATG  817

Query  761  TATCGGGAAATACCCC-CAAAAATATTTCTGCTTTTTATTATGATCCGGTGAGAGAGACT  819
            |||||||||| ||    |||| | ||||| ||||||||||| ||||| |||||| |||||
Sbjct  818  TATCGGGAAA-ACATTTCAAAGACATTTCGGCTTTTTATTACGATCCCGTGAGAAAGACT  876

Query  820  ATCAGAAGTGTCAAAGGAATTGAAAATGAGAAATTTAGGCGTTGTTATGGAT  871
            |||| ||||||||||||| || |  ||||| |||||||| ||||||||||||
Sbjct  877  ATCACAAGTGTCAAAGGACTTTATTATGAGGAATTTAGGTGTTGTTATGGAT  928



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 47571737209


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5