BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333388
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09240.1 | Symbols: | Protein kinase protein with tetratric... 1114 0.0
AT5G01060.1 | Symbols: | Protein kinase protein with tetratric... 869 0.0
> AT3G09240.1 | Symbols: | Protein kinase protein with tetratricopeptide
repeat domain | chr3:2835668-2837956 REVERSE LENGTH=1434
Length=1434
Score = 1114 bits (603), Expect = 0.0
Identities = 670/703 (95%), Gaps = 2/703 (0%)
Strand=Plus/Plus
Query 83 ATAATAACGAAGACGATGAAGGAAGTGTTTGTCCGATTTTCCGGGAATTTAGCTTGGAAC 142
||||||| ||||| |||||||||||| |||||| | ||||| ||| || ||||||||||
Sbjct 38 ATAATAAAGAAGAAGATGAAGGAAGTACTTGTCCTAATTTCCTGGAGTTCAGCTTGGAAC 97
Query 143 AGTTGAGAGTCGCAACTGACGGATTCTCCGCCGGCAACATCGTGTCGGAGCACAACGAAA 202
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 98 AGTTGAGAGTCGCAACTGACGGATTCTCCGCCGACAACATCGTGTCGGAGCACAACGAGA 157
Query 203 GGGTTCCTAACATCGTCTACAAAGGGCAGCTCAACGACGGAAGAAAGATCGCTGTCAAGC 262
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 158 GGGTTCCTAACATCGTCTACAAAGGCCAGCTCAACGACGGAAGAAAGATCGCCGTCAAGC 217
Query 263 GGTTTAAAAGGCTTTCATGGCCTGATTCTTTCGAATTCATCGAAGAAGCACAAGCTGTTG 322
||||| || |||||||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 218 GGTTTCAACGGCTTTCATGGCCTGATTCTTTAGAATTCATCGAGGAAGCACAAGCTGTAG 277
Query 323 GGAGATGTAGGAGTGAGCATATGGCTAATTTGATCGGTTGTTGCTCAGAAGGTCACGAGA 382
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 278 GGAGATGTAGGAGTGAGCATATGGCCAATTTGATCGGTTGTTGCTCAGAAGGTCACGAGA 337
Query 383 GGTTGCTCGTTGCTGAGTACATGCCTAATGGAACACTTGCTAAGCATCTCTTTCACTGGG 442
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 338 GGTTGCTTGTTGCTGAGTACATGCCTAATGAAACACTTGCTAAGCATCTCTTTCACTGGG 397
Query 443 AGAAAAGACCAATGAAATGGGAAATGAGATTAAGGGTTGCGTTACATACTGCAACAGCCT 502
|||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||
Sbjct 398 AGAAAAGACCAATGAAGTGGGAAATGAGGTTGAGAGTTGCGTTACATACTGCAACAGCCT 457
Query 503 TGGAGTACTGTAATGATAT-GGGAATAGATTTGTATCATGATCTTAACACCTACAGAATA 561
||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 458 TGGAGTACTGTAATGAT-TGGGGAATAGATTTGTATCACGATCTTAACACCTACAGAATA 516
Query 562 TTGTTTGATAAGGTTGGGAATCCTAGGCTGTCTTGTTTCGGTCTCATGAAGTGTAGCCGA 621
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 517 TTGTTTGACAAGGTTGGGAATCCTAGGCTGTCTTGTTTTGGTCTCATGAAGTGTAGCCGA 576
Query 622 GAGGGAAAGAGCTATAGTACCAACTTGGCATTTGCTCCTCCTGAATATTTACGTCTAGGT 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GAGGGAAAGAGCTATAGTACCAACTTGGCATTTGCTCCTCCTGAATATTTACGTCTAGGT 636
Query 682 ACTGTGATACCGGAGAGTGTCACATTTAGCTTCGGGACCTTGTTACTGGATCTTATGAGC 741
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 637 ACTGTGATACCGGAGAGTGTCACATTTAGCTTCGGAACCTTGTTACTGGATCTTATGAGC 696
Query 742 GGCAGACATATTCCACCTAACCATGCACTTGATCTATTCCGTG 784
||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 697 GGCAGACATATTCCACCAAACCATGCACTTGATCTGTTCCGTG 739
Score = 896 bits (485), Expect = 0.0
Identities = 537/562 (96%), Gaps = 3/562 (1%)
Strand=Plus/Plus
Query 784 GCTCTGGATGGTCAATTCTCTGATGAGGATAGAACAGAACTAATCCATCTAGCTTCCCGC 843
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 769 GCTCTGGATGGTCAATTCTCTGATGAGGATAGAACAGAACTTATCCATCTAGCTTCCCGC 828
Query 844 TGTTTCCGGCCTAAACCAGACGAGAGACCAAGTATAAAGTTTCTTATGTCTGCTCTTTCA 903
||||| || ||| ||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 829 TGTTTGCGCCCTGAACCAGACGAGAGGCCAAGCATAAAGTTTCTTATGTCAGCTCTTTCA 888
Query 904 AGACTTGAGAAACGAGCTGAGTTATGGCCCAACGTCAACGAAGAAAACATTCCTACTCCA 963
|||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 889 AGACTTGAGAAAAGAGCTGAGTTATGGCCCAACGTCAAAGAAGAAAACATCCCTACTCCA 948
Query 964 TCAGACACTAAACCTGCAACAAAGGAGCCATTGCGTTTGACCCCTTTCGGAGAAGCATGC 1023
||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 949 TCATACACTGAACCTGCAACAAAGGAGCCATTGCCCTTGACCCCTTTCGGAGAAGCATGC 1008
Query 1024 TGGAGAGTGGATCTGAGTGGTATACACGAACTACTCGAGAAACTCGGGTATGGAGAGGAT 1083
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1009 TGGAGAGTGGATCTAAGTGGTATGCACGAACTACTCGAGAAACTCGGGTATGGAGAGGAT 1068
Query 1084 GATGTGGTGGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTCAAATGCAAGAGAAT 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GATGTGGTGGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTCAAATGCAAGAGAAT 1128
Query 1144 ATGGATTACAAGAAGCATGGAGATGCCGCATTTCGTGCTAAAGATTTTGAAACAGCGATC 1203
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 1129 ATGGATTACAAGAAGCACGGAGATGCCGCATTTCGTGCTAAAGATTTTGAAACCGCAATC 1188
Query 1204 GAATTTTACACAGAGTTCATGAGTGGAGCACCAGTGGTATCACCAACAGTATTAGCCAGA 1263
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 GAATTCTACACAGAGTTCATGAGTGGAGCACCAGTGGTATCACCAACAGTATTAGCCAGA 1248
Query 1264 CGGTGTCTATGTTACCTAATGAGCT-ATATGTTCTGCGAGGCTCTAAGTGATGCTGATGC 1322
||||||||||||||||||||||| | |||||||| ||||||||||||||||||| |||||
Sbjct 1249 CGGTGTCTATGTTACCTAATGAG-TGATATGTTCCGCGAGGCTCTAAGTGATGC-GATGC 1306
Query 1323 AAGCTCAGGTCGCATCGCCAGA 1344
|| |||||||||||||||||||
Sbjct 1307 AAACTCAGGTCGCATCGCCAGA 1328
Score = 106 bits (57), Expect = 7e-22
Identities = 61/63 (97%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 1345 CTTGGAATGGAGGCTGAAGCTAAAGAAGCTCTTAGACATGGCTCTTCTCTCGAAGCTTCT 1404
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1372 CTTGGGATGGAGGCTGAAGCTAAAGAAGCTCTTAGACATGGCTCTTCTCTCGAAGCTTTT 1431
Query 1405 TAG 1407
|||
Sbjct 1432 TAG 1434
> AT5G01060.1 | Symbols: | Protein kinase protein with tetratricopeptide
repeat domain | chr5:22740-24847 FORWARD LENGTH=1500
Length=1500
Score = 869 bits (470), Expect = 0.0
Identities = 1024/1277 (80%), Gaps = 96/1277 (8%)
Strand=Plus/Plus
Query 117 GATTTTCCGGGAATTTAGCTTGGAACAGTTGAGAGTCGCAACTGACGGATTCTCCGCCGG 176
||||||||| || || || || |||||| ||||| |||| || ||||| |||||||||||
Sbjct 129 GATTTTCCGTGAGTTCAGTTTAGAACAGCTGAGAATCGCCACCGACGGTTTCTCCGCCGG 188
Query 177 CAACATCGTGTCGGAGCACAACGAAAGGGTTCCTAACATCGTCTACAAAGGGCAGCTCAA 236
|||||||| |||||||||||||| ||| || ||||||||||||||||| | |||
Sbjct 189 AAACATCGTATCGGAGCACAACGATTCGGTACCAAACATCGTCTACAAAGGAAAACTCGG 248
Query 237 CGACGGAAGAAAG-ATCGCTGTCAAGCGGTTTAAAAGGCTTTCATGGCCTGATTCTTTCG 295
||| || | | ||||| ||||| |||||| |||| ||||| ||||||||| ||||||
Sbjct 249 CGATGGTCG-TCGCATCGCCGTCAAACGGTTTCAAAGACTTTCTTGGCCTGATCCTTTCG 307
Query 296 AATTCATCGAA-GAAGCACAAGCTGTTGGGAGA-TGTAGGAGTGAGCATATGGCTAATTT 353
|||||||| || ||||||||||||||||||||| || |||||||| |||||||| |||||
Sbjct 308 AATTCATC-AATGAAGCACAAGCTGTTGGGAGATTG-AGGAGTGAACATATGGCGAATTT 365
Query 354 GATCGGTTGTTGCTCAGAAGGTC-ACGAGAGGTTGCTCGTTGCTGAGTACATGCCTAATG 412
|||||||||||| | | | | | ||||||| || || ||||||||||| ||||||||||
Sbjct 366 GATCGGTTGTTGTTGTG-ATGACAACGAGAGATTACTTGTTGCTGAGTATATGCCTAATG 424
Query 413 GAACACTT-GCTAAGCATCTCTTTCACTGGGAGAAAAGACCAATGAAATGGGAAATGAGA 471
||||| || || || ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 425 GAACA-TTAGCAAAACATCTTTTTCACTGGGAGAAAAGACCCATGAAATGGGAAATGAGG 483
Query 472 TT-AAGGGTTGCGT-TACATACTGCAACAGCCTTGGAGTACTGTAATGATATGGGAATAG 529
|| || ||||| | | |||||||||| ||| |||||||| |||||||||| ||||| |
Sbjct 484 TTGAA-AGTTGC-TCTGCATACTGCAAGAGCTTTGGAGTATTGTAATGATAAAGGAATTG 541
Query 530 ATTTGTATCATGATCTTAACACC-TACA-GAATATTGTTTGATAAGGTTGGGAATCCTAG 587
|||| || ||||||||||| || |||| || || ||||||||||| |||| |||||
Sbjct 542 ATTTATACCATGATCTTAA-TCCTTACAGGATTA-TGTTTGATAAGACAGGGATTCCTAA 599
Query 588 GCTGTCTTG-TTTCGGTCTCATGAAGTGTAGCCGA-G-AGGGAAAGAGCTATAGTACCAA 644
||| ||||| ||| |||||||||||| ||||| | | |||| |||| ||||| |||||
Sbjct 600 GCTTTCTTGCTTT-GGTCTCATGAAGAATAGCC-ATGAAGGG-AAGATTTATAGCACCAA 656
Query 645 CTTGGCATTTGCTCCTCCTGAATATTTACGTCTAGGTACTGTGATACCGGAGAGTGTCAC 704
||| || ||||||||||| || ||||| || || |||||||||||| ||||||| |||||
Sbjct 657 CTTAGCTTTTGCTCCTCCCGAGTATTTGCGCCTTGGTACTGTGATAGCGGAGAGCGTCAC 716
Query 705 ATTTAGCTTCGGGACCTTGTTACTGGATCTTATGAGCGGCAGACATATTCCACCTAACCA 764
||||||||| || ||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 717 ATTTAGCTTTGGAACCTTGTTATTGGATCTTATGAGCGGCAGACATATTCCTCCAAACCA 776
Query 765 TGCACTTGATCTATTCCGTG-CT----CTGGATGGT-C-AAT---T-C---TCT-GATG- 808
|||||||||| | ||||||| | || |||| | ||| | | ||| ||||
Sbjct 777 TGCACTTGATTTGTTCCGTGGCAAAAACTATTTGGTGCTAATGGATTCAGCTCTTGATGG 836
Query 809 --AG------GAT-A-GA-A---CAGAACTAATCCATC-TAGCTTCCCGCTGTTTCCGGC 853
|| ||| | || | |||||||||| || | ||||||| || |||||| |
Sbjct 837 TCAGTTCTCTGATGAAGACAGGACAGAACTAATACA-CGTAGCTTCTCGATGTTTCAAGA 895
Query 854 CTAAACCAGACGAGAGACCAAGTATAAAGTTTCTTATGTCTG-CTCTTTCAAGACTTGAG 912
|| ||||||| ||||| ||||||||||||||||||| | | | ||||||| |||||| ||
Sbjct 896 CTGAACCAGAAGAGAGGCCAAGTATAAAGTTTCTTAAGGC-GACTCTTTCTAGACTTCAG 954
Query 913 AAACGAGCTGAGTTATGGCCC-A--AC-GTCAACGAAGAAA-ACAT-TCCTAC-TCCA-- 963
||||| || |||| || ||| | | ||||| |||| | | |||| | || |
Sbjct 955 AAACGGGCCAAGTTGTG-CCCTATTAATGTCAA--AAGACCTATGTCTCCTCCATCAAAA 1011
Query 964 --TCAGAC--A-----CTAAACCTGCAACAAAGGAGCCATTGC-GTTTGACCCCTTTCGG 1013
|| | | | |||||||||||||| | || ||||| ||| ||| ||||||||
Sbjct 1012 AATCTGCCTGAAAAGACTAAACCTGCAACA--G-AGTCATTGAAGTT-GACTCCTTTCGG 1067
Query 1014 AGAAGCATGCTGGAGAGTGGATCTGAGTGGTATACACGAACTACTCGAGAAACTCGGGTA 1073
||| ||||| | |||| |||||| ||| ||||||| |||||||| |||||||| |||||
Sbjct 1068 AGATGCATGTTCTAGAGCGGATCTAAGTAGTATACATGAACTACTAGAGAAACTAGGGTA 1127
Query 1074 TGGAGAGGATGATGTGGT-GGTCACAAATGAGTTCTCATTCCAAATGTGGACGGGTC-AA 1131
|| ||| ||| ||| ||| ||| || ||||| ||||||||||||||||| || | ||
Sbjct 1128 TGAAGAAGATAATGGGGTTGGTAAC----GAGTTTTCATTCCAAATGTGGACCGG-CGAA 1182
Query 1132 ATGCAAGAGAATATGGATTACAAGAAGCATGGAGATGCCGCATTTCGTGCTAAAGATTTT 1191
||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||||||
Sbjct 1183 ATGCAAGAGAATATGGACTACAAGAAGCATGGAGATGCCGCGTTTCTTGCGAAAGATTTT 1242
Query 1192 GAAACAGCGATCGAATTTTACACAGAGTTCATGAGTGGAGCACC-AGTGGTATCACCAAC 1250
|| || || || ||||| |||||||||||||||| |||||| || | ||||||||||||
Sbjct 1243 GATACTGCCATTGAATTCTACACAGAGTTCATGACTGGAGCTCCTAC-GGTATCACCAAC 1301
Query 1251 AGTATTAGCCAGACGGTGTCTATGTTACCTAATGAGCT-ATATGTTCTGCGAGGCTCTAA 1309
|||||| || ||| ||||||| ||||||||||||| || | |||||| ||||||||||||
Sbjct 1302 AGTATTGGCAAGAAGGTGTCTTTGTTACCTAATGA-CTGAAATGTTCAGCGAGGCTCTAA 1360
Query 1310 GTGATGCTGATGCAAGC 1326
| ||||| |||||||||
Sbjct 1361 GCGATGC-GATGCAAGC 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5