BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333392
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39050.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1369 0.0
> AT2G39050.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr2:16303403-16305629 FORWARD LENGTH=1271
Length=1271
Score = 1369 bits (741), Expect = 0.0
Identities = 881/948 (93%), Gaps = 11/948 (1%)
Strand=Plus/Plus
Query 13 CACCACCACCAGCATCAACGTCACCACCAACGCGACGACGGCGAAGACGATCGTCACTCC 72
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 31 CACCACCACCAGCATCACCGTCACCACCAACGCGACGACGGAGAAGACGATCGTCAATCC 90
Query 73 TTCGG-GCAACCACCGCCACGCGTTGATGCTCCTCCACAACCTCATGGCCTTTACCAGTC 131
|| || | ||||||||||| ||| |||||||| |||||||||||||| |||||||||||
Sbjct 91 TTTGGAG-TACCACCGCCACACGTCGATGCTCCGCCACAACCTCATGGTCTTTACCAGTC 149
Query 132 ACAACCTCATTTTGATCCCTACGCGCCTACT-C-C-ATCTCCGGCGCCTTACCGATCAGA 188
||| |||||||||||||| |||||||||||| | | | ||||||||||||||||||||||
Sbjct 150 ACAGCCTCATTTTGATCCTTACGCGCCTACTCCTCAAGCTCCGGCGCCTTACCGATCAGA 209
Query 189 ACCTCAATTCGAACCCCACGCGCCTCCGCCTTACCGATCAGAGCCTTACTTTGAAGCTCC 248
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 210 AACTCAATTCGAACCCCACGCGCCTCCGCCTTACCGATCAGAGCCTTACTTTGAAACTCC 269
Query 249 GGCACCACCGCCTGCGTTTGGTCATGTGAGTCATGTCGGTCACCAATC-CTCCAACGAAT 307
||||||||||||| | |||||||||||||||||||| ||||||||||| | |||||||||
Sbjct 270 GGCACCACCGCCTTCATTTGGTCATGTGAGTCATGTTGGTCACCAATCAC-CCAACGAAT 328
Query 308 CCTACCCACCGGAACACCACCGTTACGGAGGTTATCCACCGCCGTCTAATTCGATATTGG 367
| |||||||||||||||||||||||||||||||||| || |||||||||||| || |||
Sbjct 329 CTTACCCACCGGAACACCACCGTTACGGAGGTTATCAACAGCCGTCTAATTCCTTACTGG 388
Query 368 AAAGCCACGGAGACCACTCTGGCGTCACGCACGTGGCTCACCATAGCTCAAATCAGCCCC 427
|||| || ||||| ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 389 AAAGTCATGGAGATCACAGTGGAGTCACGCACGTGGCTCACCATAGCTCAAATCAGCCCC 448
Query 428 AATCGTCTCCTGGTGTCTACCAC-CGCCCTGATGAGAATCGTCTGCCTGATAATCTTGCC 486
|||||||| |||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 449 AATCGTCTTCTGGTGTCTACCACAAG-CCTGATGAGAATCGTCTACCTGATAATCTTGCT 507
Query 487 GGACTCGCCGGAAGGGCGACGGTGAAGGTGTATTCGAAGGCTGAGCCTAACTATTATCTG 546
|||||||||||||| || ||||||||||||||||| ||||| |||||||||||| || ||
Sbjct 508 GGACTCGCCGGAAGAGCAACGGTGAAGGTGTATTCCAAGGCGGAGCCTAACTATAATTTG 567
Query 547 ACGATCAGAGATGGTAAGGTCATCCTCGCTCCAGCCGATCCATCTGATGAAGCACAGCAT 606
|||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||
Sbjct 568 ACGATCAGAGATGGTAAGGTTATTCTCGCCCCAGCGGATCCATCTGATGAAGCACAGCAT 627
Query 607 TGGTACAAAGACGAGAAGTATAGTACTAAAGTGAAGGACGCAGACGGTCATCCTTGTTTT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 TGGTACAAAGACGAGAAGTATAGTACTAAAGTGAAGGACGCAGACGGTCATCCTTGTTTT 687
Query 667 GCTCTTGTAAACAAGGCTACTGGTGAAGCAATGAAGCATTCTGTGGGAGCTACCCATCCC 726
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 688 GCTCTTGTAAACAAAGCTACTGGTGAAGCAATGAAGCATTCTGTGGGAGCTACTCATCCC 747
Query 727 GTGCATCTGACTCGATATGAT-CCTGATAAGCTTGATGAGTCTGTACTATGGACAGAGAG 785
|||||||||| |||||||| | |||||||||||||| ||||| |||||||||||||||||
Sbjct 748 GTGCATCTGATTCGATATG-TGCCTGATAAGCTTGACGAGTCAGTACTATGGACAGAGAG 806
Query 786 CAAGGATTTGGGCGATGGATATCGCACGATAAGGATGATAAACAATACAAGGCTAAACGT 845
||||||||| ||||||||||||||||| ||||| ||| |||||||||| |||||||||||
Sbjct 807 CAAGGATTTTGGCGATGGATATCGCACAATAAGAATGGTAAACAATACGAGGCTAAACGT 866
Query 846 GGATGCATATCATGGTGACAGCAAATCTGGTGGTGTCCGTGATGGCACGACTATTGTCCT 905
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 867 GGATGCATATCATGGTGACAGCAAATCTGGTGGTGTACGTGATGGCACGACTATCGTCCT 926
Query 906 CTGGGACTGGAACAAAGGCGACAACCAGCGCTGGAAGATCTTTCCTTT 953
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 927 CTGGGACTGGAACAAAGGCGACAACCAGCTCTGGAAGATCTTTCCTTT 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5