BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333398
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16820.1 | Symbols: | F-box and associated interaction doma... 693 0.0
AT5G36730.1 | Symbols: | F-box and associated interaction doma... 254 1e-66
AT5G36820.1 | Symbols: | F-box and associated interaction doma... 254 1e-66
AT3G16880.1 | Symbols: | F-box and associated interaction doma... 180 2e-44
AT3G17320.1 | Symbols: | F-box and associated interaction doma... 159 3e-38
AT2G28280.1 | Symbols: | pseudogene, hypothetical protein | ch... 119 5e-26
AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | ch... 73.1 4e-12
AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 63.9 3e-09
> AT3G16820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5728016-5729174 REVERSE LENGTH=942
Length=942
Score = 693 bits (375), Expect = 0.0
Identities = 622/736 (85%), Gaps = 38/736 (5%)
Strand=Plus/Plus
Query 171 TGA-CGTCAATCTCCATGGCATTGAAAACAATGTTGATCCATCTATAGAGGTTAAGGGTA 229
||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| |||
Sbjct 215 TGAGCGTCAATCTCCATGGCATTCAAAACAATGTTGATCCATCTATAGAGTTTAAATGTA 274
Query 230 AACTTATTAGCCTA-AACA-T-AGCT-G---A-TC-A-----AATC-GTTTATGAGATTG 274
||||||| |||||| | | | || | | | || | | | |||||||||| ||
Sbjct 275 AACTTATCAGCCTAGATGATTCAGATCGAATAGTCGATTTTCACCCAGTTTATGAGACTG 334
Query 275 AAATTTACAACTTTAACTCTGATTCATGGAAG---GTTGTTGATTTCACTCCTGACGGGG 331
|||||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct 335 AAATTTACAACTTTCACTCTGATTCATGGAAGAATATTGTTGATTCCACTCCTGAAGGGG 394
Query 332 ATAGGCGCTTTTTTGTACATGGCGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTAGAG 391
||| || | |||| ||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 395 ATATGCAATATTTTAAACAAGGCGTGTCTCTTAAGGGAAATACTTACTGGTTTGCTAGAA 454
Query 392 AGTATGTGAGGTATGAAGGTGTACAAGAAGTAATGAATTACGTGGCTAGTTTCTTGATTT 451
||||||||| |||||||| | || ||| || | | | | || ||||||||||||||
Sbjct 455 AGTATGTGATCTATGAAGGAGGAC---AAG-AA-GCA-T--G-GGTTAGTTTCTTGATTT 505
Query 452 GTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTTCCTCTGCCTTTTGAC-ATTTTT 510
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
Sbjct 506 GTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTTACTCTGCCTTTTGACTATTCT- 564
Query 511 ATAATCGATAATGTGAGTCTCTCGAGTGTTAGAGAAGAGCAGCTTGTGGTGTTACATCAC 570
| || || | ||||||||||| ||||| ||||||||||||||||||| ||||| |||||
Sbjct 565 ACAAAGGAGAGTGTGAGTCTCTTGAGTGCTAGAGAAGAGCAGCTTGTGCTGTTATATCAC 624
Query 571 CAATGGATGA-AATTGAGGATGGAGATATGGGTTAGTAATAAGATTGAGC-CTAATGCAG 628
| ||| | | ||| || |||||||||||||||||||||||||||||||| | ||||| |
Sbjct 625 CCCTGGTTTACAAT-GATGATGGAGATATGGGTTAGTAATAAGATTGAGCTC-AATGCGG 682
Query 629 TGTCGTGGAGAAAGTTGTTAGAGGTTAATATGAGACCATTACCTCGAT-ATCGTTTTCGT 687
|||| |||| |||||| ||||||||||| |||| | |||| |||| || |||| ||| ||
Sbjct 683 TGTCATGGATAAAGTTCTTAGAGGTTAACATGATAACATTCCCTC-ATTATCGGTTTAGT 741
Query 688 CTTGACCATGGGAGTTTCTTCATTGACGAGAAGAATAAGGTCGTTGTGGTTCTGGATAAA 747
|| |||||| |||||||||||||||| ||||||||||||| || |||||| ||||||||
Sbjct 742 TTTCACCATGTGAGTTTCTTCATTGACAAGAAGAATAAGGTTGTAGTGGTTTTGGATAAA 801
Query 748 GACGAAGAGACG-GAAACCCGCAACTTAGTTTATTTCATTGGAGAGGATGGATATTTCAA 806
||| |||||||| | | |||||||||| |||||||||||||| ||||||||||||||
Sbjct 802 GACAAAGAGACGCGTT-CTCGCAACTTAGGATATTTCATTGGAGATGATGGATATTTCAA 860
Query 807 AGAAGTGGAACTGGGAGAATCTAGAGGCAAAAATGGTTCTCCATTTGTGAGCTCTTATGT 866
||||||||||||||||| |||||||| || |||||||| |||||||||| |||||||||
Sbjct 861 AGAAGTGGAACTGGGAGGATCTAGAGACAGAAATGGTTATCCATTTGTGTTCTCTTATGT 920
Query 867 TCCAAGTTCAGTGCAA 882
||||||||||||||||
Sbjct 921 TCCAAGTTCAGTGCAA 936
Score = 237 bits (128), Expect = 1e-61
Identities = 161/176 (91%), Gaps = 6/176 (3%)
Strand=Plus/Plus
Query 1 ATGGCTATGTCTA-ATCTTCCTAGGGATTTGGTAGAAGAGGTGCTCTCTAG-GCTTTCGG 58
||||| || || | |||||||||||||||||||||| |||||||||||||| | || |||
Sbjct 1 ATGGCGATTTC-AGATCTTCCTAGGGATTTGGTAGAGGAGGTGCTCTCTAGAG-TTCCGG 58
Query 59 TGACATCTAC-GAGAGCAGTGCGATCTACTTGCAAAAAATGGAACATTATATCCAAAGAC 117
|||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TGACATCT-CTGAGAACAGTGCGATCTACTTGCAAAAAATGGAACATTATATCCAAAGAC 117
Query 118 GAGAGCTTTACAACGAAGTACGGTGCTCAAGCAAACGCAGCAGCAAGGGAAAGTGA 173
||||||||||||| |||| ||| || ||||||||||||||||||||||||||||||
Sbjct 118 GAGAGCTTTACAAAGAAGCACGTTGGTCAAGCAAACGCAGCAGCAAGGGAAAGTGA 173
> AT5G36730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14436317-14437549 FORWARD LENGTH=1233
Length=1233
Score = 254 bits (137), Expect = 1e-66
Identities = 482/639 (75%), Gaps = 62/639 (10%)
Strand=Plus/Plus
Query 272 TTGAAATTTACAACTTTAACTCTGATTCATGGAAGGTTGTT-GATTTCACTCCTGAC-GG 329
||||||| ||||| |||||||||||||||||||||||| || |||||||| |||| ||
Sbjct 548 TTGAAATCTACAATTTTAACTCTGATTCATGGAAGGTT-TTATATTTCACTTGTGACTGG 606
Query 330 GGA-TAGGCGCTTTTTTGTACATGGCGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTA 388
| || || |||| | || || |||||||||||||||||||||||||||||||||
Sbjct 607 AAATTA-CCG-TTTTCTCAACTTGTTGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTC 664
Query 389 GAGAGTATGTGAGGTATGA-AGGTGTA-CAAGAAGTAATGAATTACGTGGCTAG-TTTCT 445
||||| |||| | ||| | | | | | |||||| | | | | | | | || | |||||
Sbjct 665 GAGAG-ATGT-A--TAT-ACACG-G-ACCAAGAA-T-A-G-A-T-C-TCCCT-GATTTCT 709
Query 446 TGATTTGTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTTCCTCTGCCTTTTGACA 505
|||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||
Sbjct 710 TGATTTGTTTTGATTTTACAACAGAGAGATTTGGACCGCGTCTTCATCTGCCGTTTCAC- 768
Query 506 TTT--TTATAATCGATAATGTGAGTCTCTCGAGTGTTAGAGAAGAGCAGCTTGTGGTGTT 563
| | || | | |||| ||||| |||| | |||||||||||||||||||||| ||||||
Sbjct 769 TCTCGTTGTGTT-GATACTGTGACTCTCGCTAGTGTTAGAGAAGAGCAGCTTGCGGTGTT 827
Query 564 ACATCACCAATGGATGAAA--TTGAGGATGGAGATATGGGTTA-GTAATAAGATTGAGCC 620
| ||| | | | ||| |||| | ||| ||||| | | | | ||||||||||||
Sbjct 828 ATTTCAGGACTCAA--AAACGTTGATCCTAGAGGTATGGATAACG-ACTAAGATTGAGCC 884
Query 621 TAATGCAGTGTCGTGGAG-A--AAGTTGTT---AGAGGTTAATATGAGACCATT-ACCTC 673
|||||| || || ||||| | ||| |||| ||| || |||||||| ||| | || |
Sbjct 885 TAATGCGGTCTCATGGAGCAGCAAGGTGTTCTTAGAAGTGAATATGAGTCCACTCAC-TG 943
Query 674 GATATC-GTTTTCGTCTTGACCAT-GGGAGTTTCTTCATTGACGAGAAGAATAAGGTCGT 731
| | || |||| || | | | | |||||||||||||||| ||| |||| || |||||
Sbjct 944 GTTTTCAGTTTAA-TCGT-AGCTTTGGGAGTTTCTTCATTGTTGAGGAGAAAAATGTCGT 1001
Query 732 TGTGGTTC-TGGAT-AAAGACGAAGAG-ACGG-AAACCCGCAACTTAGTTTATTTCATTG 787
|||||||| | || |||| || | | | |||| | ||| ||| ||| ||||||
Sbjct 1002 TGTGGTTCCT--ATTAAAG--GAGG-GCATTTCAAAC--GAAACCTAGCTTACATCATTG 1054
Query 788 GAGAGGATGGATATTTCAAAGAAGTGGAACTGGGAGAATCTAGAGGCA-A-A-A-ATGGT 843
|| |||||| ||| |||||||||||||| || |||| | || || | | | || |
Sbjct 1055 GAAAGGATGAATACTTCAAAGAAGTGGATCTTGGAGTGCCAAGTT-CATATATATATTTT 1113
Query 844 TCTCCATTTGTGAGCTCTTATGTTCCAAGTTCAGTGCAA 882
|| ||| |||| |||||||||||||||||| ||| |||
Sbjct 1114 TCCCCACATGTGTGCTCTTATGTTCCAAGTTTAGTACAA 1152
> AT5G36820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14495617-14496849 FORWARD LENGTH=1233
Length=1233
Score = 254 bits (137), Expect = 1e-66
Identities = 482/639 (75%), Gaps = 62/639 (10%)
Strand=Plus/Plus
Query 272 TTGAAATTTACAACTTTAACTCTGATTCATGGAAGGTTGTT-GATTTCACTCCTGAC-GG 329
||||||| ||||| |||||||||||||||||||||||| || |||||||| |||| ||
Sbjct 548 TTGAAATCTACAATTTTAACTCTGATTCATGGAAGGTT-TTATATTTCACTTGTGACTGG 606
Query 330 GGA-TAGGCGCTTTTTTGTACATGGCGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTA 388
| || || |||| | || || |||||||||||||||||||||||||||||||||
Sbjct 607 AAATTA-CCG-TTTTCTCAACTTGTTGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTC 664
Query 389 GAGAGTATGTGAGGTATGA-AGGTGTA-CAAGAAGTAATGAATTACGTGGCTAG-TTTCT 445
||||| |||| | ||| | | | | | |||||| | | | | | | | || | |||||
Sbjct 665 GAGAG-ATGT-A--TAT-ACACG-G-ACCAAGAA-T-A-G-A-T-C-TCCCT-GATTTCT 709
Query 446 TGATTTGTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTTCCTCTGCCTTTTGACA 505
|||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||
Sbjct 710 TGATTTGTTTTGATTTTACAACAGAGAGATTTGGACCGCGTCTTCATCTGCCGTTTCAC- 768
Query 506 TTT--TTATAATCGATAATGTGAGTCTCTCGAGTGTTAGAGAAGAGCAGCTTGTGGTGTT 563
| | || | | |||| ||||| |||| | |||||||||||||||||||||| ||||||
Sbjct 769 TCTCGTTGTGTT-GATACTGTGACTCTCGCTAGTGTTAGAGAAGAGCAGCTTGCGGTGTT 827
Query 564 ACATCACCAATGGATGAAA--TTGAGGATGGAGATATGGGTTA-GTAATAAGATTGAGCC 620
| ||| | | | ||| |||| | ||| ||||| | | | | ||||||||||||
Sbjct 828 ATTTCAGGACTCAA--AAACGTTGATCCTAGAGGTATGGATAACG-ACTAAGATTGAGCC 884
Query 621 TAATGCAGTGTCGTGGAG-A--AAGTTGTT---AGAGGTTAATATGAGACCATT-ACCTC 673
|||||| || || ||||| | ||| |||| ||| || |||||||| ||| | || |
Sbjct 885 TAATGCGGTCTCATGGAGCAGCAAGGTGTTCTTAGAAGTGAATATGAGTCCACTCAC-TG 943
Query 674 GATATC-GTTTTCGTCTTGACCAT-GGGAGTTTCTTCATTGACGAGAAGAATAAGGTCGT 731
| | || |||| || | | | | |||||||||||||||| ||| |||| || |||||
Sbjct 944 GTTTTCAGTTTAA-TCGT-AGCTTTGGGAGTTTCTTCATTGTTGAGGAGAAAAATGTCGT 1001
Query 732 TGTGGTTC-TGGAT-AAAGACGAAGAG-ACGG-AAACCCGCAACTTAGTTTATTTCATTG 787
|||||||| | || |||| || | | | |||| | ||| ||| ||| ||||||
Sbjct 1002 TGTGGTTCCT--ATTAAAG--GAGG-GCATTTCAAAC--GAAACCTAGCTTACATCATTG 1054
Query 788 GAGAGGATGGATATTTCAAAGAAGTGGAACTGGGAGAATCTAGAGGCA-A-A-A-ATGGT 843
|| |||||| ||| |||||||||||||| || |||| | || || | | | || |
Sbjct 1055 GAAAGGATGAATACTTCAAAGAAGTGGATCTTGGAGTGCCAAGTT-CATATATATATTTT 1113
Query 844 TCTCCATTTGTGAGCTCTTATGTTCCAAGTTCAGTGCAA 882
|| ||| |||| |||||||||||||||||| ||| |||
Sbjct 1114 TCCCCACATGTGTGCTCTTATGTTCCAAGTTTAGTACAA 1152
> AT3G16880.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5766733-5767830 FORWARD LENGTH=1098
Length=1098
Score = 180 bits (97), Expect = 2e-44
Identities = 356/472 (75%), Gaps = 54/472 (11%)
Strand=Plus/Plus
Query 442 TTCTTGATTTGTTTTGATTTTACAACAGAGAGATTTGGACCGCGACT-T-CCTCTGCCTT 499
|||||||||| ||||||||||||||||||||||||||||||| ||| | |||||||| |
Sbjct 646 TTCTTGATTTCTTTTGATTTTACAACAGAGAGATTTGGACCG--ACTCTGCCTCTGCCGT 703
Query 500 TTGACATTT--TTATA-ATCGATAATGTGAG-TCTCTCGAGTGTTAGAGAAGAGCAGCTT 555
| || | | || | | |||| |||| | |||||| ||||||||||||||| | |||
Sbjct 704 TCCAC-TCTCGTTGTGGA--GATATTGTG-GCTCTCTCTAGTGTTAGAGAAGAGAAACTT 759
Query 556 GTGGTGTTACATCACCAATGGA-TGAAATTGAGGATGGAGATATGGGTTAGTAATAAGAT 614
| ||||||| ||||| || | | | || ||||||||||||||| ||| ||| |||||
Sbjct 760 GCAGTGTTACTTCACCGCTGCAAT-ATATCAAGGATGGAGATATGGATTACTAACAAGAT 818
Query 615 TGAGCCTAATGCA--GTGTCGTGGAGAAAGTTGTTAGAGGTTAATA-TGAGACCATTAC- 670
|||||| || || ||||||||| |||||||||| |||| | || ||| || |
Sbjct 819 TGAGCCCAA--CAATGTGTCGTGGGGAAAGTTGTTC----TTAACAGTG-GAC-ATGAAA 870
Query 671 CTCGATATCGTT-TTCGTCTTGACCATGGGAGTTTCTTCATTGACGAGAAGAATAAGGTC 729
| | | || || || | | || ||| | |||||||||||||||| |||| || ||
Sbjct 871 C-C-AC-TCATTATT-GA-T-GA---TGGAATTTTCTTCATTGACGAGGAGAAGAAAGTA 921
Query 730 GTTGTGGTTCTGGATAAAGACGAAGAGACG-GAAACCCGCAACTTAGTTTATTTCATTGG 788
||||||||| | ||||| ||| |||||| | |||||| | | | || ||| |||||||
Sbjct 922 GTTGTGGTTTTTGATAAGGACAAAGAGATGAGAAACC-GTATCACAGCTTACATCATTGG 980
Query 789 AGAGGATGGATATTTCA-AAGAAGTGGAACTGGGAGAATCTAGAGGCAAAAATGGTTCTC 847
|||| ||||||| |||| || ||||||| || ||||| ||| || || | || ||
Sbjct 981 AGAGAATGGATACTTCAGAA-AAGTGGATCTCGGAGATTCT-GA---AAG--T--TT-TC 1030
Query 848 CAT-TT-GTGAGCTCTTATGTTCCAAGTTCAGTGCAAGTTA-GCAACTCGCA 896
| | || | | |||||||||| |||||||||||| || | | |||||| |||
Sbjct 1031 C-TGTTAG-GTGCTCTTATGTACCAAGTTCAGTGGAAATCAAGCAACTGGCA 1080
> AT3G17320.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5915427-5916656 REVERSE LENGTH=1230
Length=1230
Score = 159 bits (86), Expect = 3e-38
Identities = 171/211 (81%), Gaps = 10/211 (5%)
Strand=Plus/Plus
Query 437 CTAGTTTCTTGA-TTTGTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTTCCTCTG 495
|||||||||| | | |||||||||||||||| ||||| ||||||| |||| || ||||||
Sbjct 782 CTAGTTTCTT-ACTATGTTTTGATTTTACAATAGAGAAATTTGGATCGCGTCTGCCTCTG 840
Query 496 CC-TTTTGACATT-TTTATAATCGATAATGTGAGTCTCTCGAGTGTTAGAGAAGAGCAGC 553
|| ||| | | || | | | || |||| | | ||| || ||||||||||||||| | |
Sbjct 841 CCATTTCGGCCTTGTGT-TGAT-GATACCATAACTCTATCTAGTGTTAGAGAAGAGAAAC 898
Query 554 TTGTGGTGTTACATCACCAAT-GGATGA-AATTGAGGATGGAGATATGGGTTAGTAATAA 611
||| ||||||| |||| | || |||| | || | ||| || ||||||| ||||||||||
Sbjct 899 TTGCGGTGTTATATCAGCGATGGGAT-ATAA-CGTGGACGGGGATATGGATTAGTAATAA 956
Query 612 GATTGAGCCTAATGCAGTGTCGTGGAGAAAG 642
||||||||||||||||||||||||||| |||
Sbjct 957 GATTGAGCCTAATGCAGTGTCGTGGAGCAAG 987
> AT2G28280.1 | Symbols: | pseudogene, hypothetical protein |
chr2:12054736-12056452 REVERSE LENGTH=1717
Length=1717
Score = 119 bits (64), Expect = 5e-26
Identities = 321/438 (73%), Gaps = 45/438 (10%)
Strand=Plus/Plus
Query 472 AGATTTGGACCGCGACTTCCTCTGCCTTT-TGA--CATTTTTATAATCGATAATGTGA-G 527
||||||| |||||| || ||||||||||| || | | ||| | |||| ||||| |
Sbjct 1142 AGATTTGAACCGCGTCTGCCTCTGCCTTTCCGAGCCGTATTT-GGA--GATACTGTGACG 1198
Query 528 TCTCT-CGAGTGTTAGAGAAGAGCAGCTTGTGGTGTTACATCACCAATGGATGAAAT-TG 585
|| | | |||||||||||||||||||||| |||| | ||||| || | || |
Sbjct 1199 -CT-TGCTAGTGTTAGAGAAGAGCAGCTTGCGGTGCTGTTTCACC---GG--G-CATCCG 1250
Query 586 AGGATGGAGATATGGGTTAGTAATAAGATTGAGCCTAATGCAGTGTCGTGGAGAAAGTTG 645
| | ||||||||| ||| ||||||||||||||||||||||||||||||||| || |||
Sbjct 1251 TCG-TCGAGATATGGATTACTAATAAGATTGAGCCTAATGCAGTGTCGTGGAGCAACTTG 1309
Query 646 TTAGA-G--GTTAATATGAGACCATTAC-CTCGATATCGTTTTCGTCTTGACCATGGGAG 701
||| | ||| |||||| |||| | | || | | | | |||| | || | | ||||
Sbjct 1310 TTATTTGCTGTTGATATGAAACCAGT-CGCTGGTTTTTGGTTTCCTAATGTCGGTAGGAG 1368
Query 702 TTTCTTCATTGACGAGAAGAATAAGGTCGTTGTGGTTCTGGATAAAGACGA-AG-AGACG 759
||||||| |||||||| |||| ||||||| || ||||| |||||||| || | ||||
Sbjct 1369 TTTCTTCGTTGACGAGGAGAAGAAGGTCGCGGTTGTTCTTGATAAAGA-GATAATAGACA 1427
Query 760 GAA----ACC--C--GCAA-CT-TAGT--TTATTTCATTGGAGAGGATGGATAT-TTCAA 806
|| ||| | || | || | ||| |||||||| | ||||| || || |
Sbjct 1428 -AATGTCACCTTCCCGCTCGCAATATTGCTTACATCATTGGAAATAATGGA-ATCTTGAG 1485
Query 807 -AGAAGTGGAACTGGGAGAATCTAGAGGCAAAAATGGTT-CTCCATTTGTGAGCTCTTAT 864
| ||||||| || || |||||||||| ||| | ||| | ||| ||||| ||||||||
Sbjct 1486 TA-AAGTGGATCTTGGCGAATCTAGAGACAAGTTTTGTTAC-CCACTTGTGTGCTCTTAT 1543
Query 865 GTTCCAAGTTCAGTGCAA 882
|||||||| |||||||||
Sbjct 1544 GTTCCAAGCTCAGTGCAA 1561
> AT5G28527.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10513366-10514577 FORWARD LENGTH=1212
Length=1212
Score = 73.1 bits (39), Expect = 4e-12
Identities = 153/206 (74%), Gaps = 16/206 (8%)
Strand=Plus/Plus
Query 441 TTTCTTGATT-TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTT-CCTCTGCCT 498
|||||| | | ||||||||||| |||| |||||||||||| |||| || ||||| ||
Sbjct 745 TTTCTT-AGTATGTTTTGATTTCACAAAAGAGAGATTTGGGCCGCTT-TTGCCTCTACCG 802
Query 499 TTTGACATTTT-TA-T-AATCGATAATGTGAGTCTCTCGAGTGTTAGAGAAGAGCAGCTT 555
||||| | | | | || |||| | | ||| || ||||||||||| |||||||||
Sbjct 803 TTTGAG-TGGTATCCTGAA--GATACCGCCACTCTATCTAGTGTTAGAGAGGAGCAGCTT 859
Query 556 GTGGTGTTACATCACCAATGGATGA-A-ATTGAGGATGG-AGATATGGGTTAGTAATAAG 612
| ||| ||| | | | |||| || | || || | ||| ||||| || | | || ||||
Sbjct 860 GCGGTTTTATTTTAGCGATGG--GACACATCGATG-TGGGAGATACGGATAACTACTAAG 916
Query 613 ATTGAGCCTAATGCAGTGTCGTGGAG 638
|||||||| || || |||||||||||
Sbjct 917 ATTGAGCCCAACGCGGTGTCGTGGAG 942
> AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508
FORWARD LENGTH=2038
Length=2038
Score = 63.9 bits (34), Expect = 3e-09
Identities = 43/47 (91%), Gaps = 2/47 (4%)
Strand=Plus/Plus
Query 451 TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTT-CCTCTGC 496
||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 740 TGTTTTGATTTTACAACAGAGAGATTTGGACCGTGT-TTGCCTCTGC 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5