BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333399
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39795.1 | Symbols: | Mitochondrial glycoprotein family pro... 1158 0.0
> AT2G39795.1 | Symbols: | Mitochondrial glycoprotein family protein
| chr2:16596987-16598162 FORWARD LENGTH=926
Length=926
Score = 1158 bits (627), Expect = 0.0
Identities = 708/748 (95%), Gaps = 2/748 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTTAGCTTGGTGCGTTGTACGCAGGTCAGCATCTAAGTTTGCTTCCGTTTATGGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 40 ATGGCTTTAGCTTGGTGCGTTGTACGCAGGTCAGCATCTAAGTTTGCTTCCGTTTATGGT 99
Query 61 GGTCGAGTCCGATCTATCTCCGCCGTTGTGAACCGCGCGTCTCTAGCTCGCAACCCATCT 120
|| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 100 GGCCGAGTCCGATCTATCTCCGCCGTTGCGAACCGCGCCTCTCTAGCTCGCAACCCATCT 159
Query 121 CCGGTTCGTCCATTGGTCTCTCGCGGCTTTAATTACTCGACGGCTATTGATCGAATGAGC 180
| |||||||||| |||||||||| ||| |||||||||||||||||||||||||| |||
Sbjct 160 TCAATTCGTCCATTCGTCTCTCGCGCCTTAAATTACTCGACGGCTATTGATCGAATTAGC 219
Query 181 TCCGAGCAATCACTTATCCGAGTTATCGACTCCGAGATCAATTCTGCTTCGCAAACCGAT 240
||||||||| | |||||||||||||| |||||||| ||||| ||||||| |||| |||||
Sbjct 220 TCCGAGCAAACGCTTATCCGAGTTATTGACTCCGAAATCAACTCTGCTTTGCAATCCGAT 279
Query 241 AATATCGATTTGGATGAAGAGATAACTCCAGGAAGCTTTCCTTTTAGAATTGAAGACAAT 300
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 280 AATATCGATTCGGATGAAGAGATGACTCCAGGAAGCTTTCCTTTTAGAATTGAAGACAAA 339
Query 301 CCTGGACATCAGAATGTAACATTGACTAGAGACTACAATGGGGAACATATTAAAGTTATA 360
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 340 CCTGGAAATCAGAATGTTACATTGACTAGAGACTACAATGGGGAACATATTAAAGTTGTT 399
Query 361 GTAAGCATGCCTAGTCTTGTTTCAgatgaaaatgatgatgatgctgatgatgatgaAGGT 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 400 GTAAGCATGCCTAGTCTTGTTTCAGATGAAAATGATGATGATGATGATGATGATGAAGGT 459
Query 421 CCTAGTAATGAATCAAGTATTCCACTAGTTGTGACTGTTACCAAGAAGAGCGGACTCAGC 480
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |
Sbjct 460 CCTAGTAATGAATCGAGTATTCCACTAGTTGTGACTGTTACTAAGAAGAGTGGACTCA-C 518
Query 481 T-TAGAGTTTAGCTGCATGGCTTTTCCTGATGAGATTGCTATAGATGCCTTATCTGTGAA 539
| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 519 TCTAGAGTTTAGCTGTATGGCTTTTCCTGATGAGATTGCTATAGATGCTTTATCTGTGAA 578
Query 540 ACATCCTGGGGATTCTTTGGAGGATCAAATGGCCAATGAAGGGCCTGATTTCGAAGACTT 599
|||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 579 ACATCCTGGGGACTCTTTGGAGGATCAACTGGCTAATGAAGGGCCTGATTTTGAAGACTT 638
Query 600 GGACGAGAATCTGAAGAAGACGTTCTACAAGTTTTTGGAGATCAGAGGAGTGAAAGCTAG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GGACGAGAATCTGAAGAAGACGTTCTACAAGTTTTTGGAGATCAGAGGAGTGAAAGCTAG 698
Query 660 TACGACGAATTTCCTGCACGAGTACATGATGAGGAAAGTGAACCGAGAGTACTTGTTATG 719
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 699 CACGACGAATTTCCTGCACGAGTACATGACGAGGAAAGTGAACCGAGAGTACTTTTTATG 758
Query 720 GTTGAAGAATGTTAAGGAGTTTATGGAA 747
||||||||||||||||||||| ||||||
Sbjct 759 GTTGAAGAATGTTAAGGAGTTCATGGAA 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5