BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333410
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45740.1 | Symbols: PEX11D | peroxin 11D | chr2:18839716-188... 1247 0.0
> AT2G45740.1 | Symbols: PEX11D | peroxin 11D | chr2:18839716-18841403
FORWARD LENGTH=1161
Length=1161
Score = 1247 bits (675), Expect = 0.0
Identities = 716/736 (97%), Gaps = 1/736 (0%)
Strand=Plus/Plus
Query 1 ATGGGGACGACATTAGATGTGTCAAGAGCAGAGCTAGCACTTGTGGTAATGTATTTGAAC 60
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 150 ATGGGGACGACGTTAGATGTATCAAGAGCAGAGCTAGCACTTGTGGTAATGTATTTGAAC 209
Query 61 AAAGCAGAGGCAAGGGATAAGTTATGCAGAGCGATACAGTATGGTTCCAAGTTCTTGAGT 120
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 210 AAAGCAGAGGCAAGAGATAAGTTATGCAGAGCTATACAGTATGGTTCCAAGTTCTTGAGT 269
Query 121 GGTGGACAACCTGGTACTGCTCAAAATGTTGACAAATCTACTAGCTTAGCCAGAAAAGTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 270 GGTGGACAACCTGGTACTGCTCAAAATGTTGACAAATCTACTAGCTTAGCAAGAAAAGTC 329
Query 181 TTCCGTCTTTTCAAGTTTGTGAATGACTTGCATGGTCTCATCAGTCCTGTGCCTAAAGGG 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 330 TTCCGTCTTTTCAAGTTTGTGAATGACTTGCATGGTCTTATCAGTCCTGTGCCTAAAGGA 389
Query 241 ACTCCTCTTCCTCTTGTTTTACTTGGAAAGTCGAAAAACGCACTTTTATCTACATTCTTG 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 390 ACTCCTCTTCCTCTTGTTTTACTTGGAAAGTCGAAGAACGCACTTTTATCTACATTCTTG 449
Query 301 TTCCTGGATCAAATTGTCTGGCTTGGGAGATCAGGAATATATAAGAACAAAGAACGAGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TTCCTGGATCAAATTGTCTGGCTTGGGAGATCAGGAATATATAAGAACAAAGAACGAGCT 509
Query 361 GAGTTACTTGGACGTATATCTCTTTTCTGCTGGATGGGATCTTCTGTATGTACAACTTTA 420
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 510 GAGTTACTTGGACGTATATCTCTCTTCTGCTGGATGGGATCTTCTGTCTGCACAACTTTA 569
Query 421 GTCGAGGTTGGTGAGATTGGAAGGCTTTCTTCATCAATGAAGAAGATCGAAAAGGGACTC 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 GTCGAGGTTGGTGAGATGGGAAGGCTTTCTTCATCAATGAAGAAGATCGAAAAGGGACTC 629
Query 481 AAGCATGGAAACAAGTATCAAGATGAGGAATATCGTGCTAAGCTAAAACAATCAAACGAG 540
||| |||||||||||||||| |||||||| |||||||||||||||||| |||||||||||
Sbjct 630 AAGAATGGAAACAAGTATCAGGATGAGGATTATCGTGCTAAGCTAAAAAAATCAAACGAG 689
Query 541 AGGTCACTTGCTTTGATCAAATCGGCTATGGACATTGTTGTAGCAGCTGGTCTTCTTCAG 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 690 AGGTCACTTGCTTTGATCAAATCAGCTATGGACATTGTTGTAGCAGCTGGTCTTCTTCAG 749
Query 601 TTAGCTCCAAAGAAGATCACTCCTCGTGTCACCGGAGCTTTTGGAT-CATCACCTCCATC 659
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 750 TTAGCTCCAACGAAGATCACTCCTCGTGTCACCGGAGCTTTTGGATTCATCACCTCCATC 809
Query 660 ATTTCTTGTTACCAGTTGCTTCCGACACGCCCCAAGATCAAAACACCCTGAAGTCGATCG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 810 ATTTCTTGTTACCAGTTGCTTCCGACACGCCCCAAGATCAAAACACCCTGAAGTCAATCG 869
Query 720 AGGAAGCTGGTGTTAA 735
||||||||||||||||
Sbjct 870 AGGAAGCTGGTGTTAA 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5