BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333411

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13630.1 | Symbols:  | unknown protein; Has 21 Blast hits to...   750    0.0  


> AT3G13630.1 | Symbols:  | unknown protein; Has 21 Blast hits 
to 21 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 2; Plants - 19; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:4456954-4458134 FORWARD LENGTH=811
Length=811

 Score =  750 bits (406),  Expect = 0.0
 Identities = 536/593 (90%), Gaps = 31/593 (5%)
 Strand=Plus/Plus

Query  1    ATGGAAGGTGGCGCTGAGGATCTGAGTGTTGAGATTGTTGGTCTACTGGAAACGGCTTAT  60
            |||||||||||||||||||||||||||| |||||||||||||||| | ||||| ||||||
Sbjct  85   ATGGAAGGTGGCGCTGAGGATCTGAGTGCTGAGATTGTTGGTCTATTAGAAACTGCTTAT  144

Query  61   GAGAGGCGTGAGC-CGAT-GACGAAAATCCGTAAACAGCTTGAAAGAATGTCAGAGACTT  118
            |||||| |||| | |||| ||| ||||||||||| ||||||||||||||||| |||||||
Sbjct  145  GAGAGGAGTGA-CTCGATGGAC-AAAATCCGTAATCAGCTTGAAAGAATGTCGGAGACTT  202

Query  119  TGGCCGAAGCTGTGCCTCACTCAAAATATGCGGAGGCCATTGTGAAGGGAATGCTTCTTG  178
            |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  203  TGGCCGAATCTGTGCCTCACTCAAAATACGCGGAGGCCATTGTGAAGGGAATGCTTCTTG  262

Query  179  CTGTTCAAAGACGTGCAAACCTAAACGTGCTCCTTAGCATCCAAGAAACCATCGATCAGG  238
            |||||| |||||||| ||||||||||| || |||||||||||||||||||||||||  ||
Sbjct  263  CTGTTCGAAGACGTGTAAACCTAAACGAGCGCCTTAGCATCCAAGAAACCATCGATTTGG  322

Query  239  TTTTTGATACCTATATATGGTCCTATCCTTATTCCATATGCCACCAGC-A-A--A-AC-T  292
            ||||||||  |   |||||||||||||||||||||||||||||||||| | |  | ||  
Sbjct  323  TTTTTGAT-GC---ATATGGTCCTATCCTTATTCCATATGCCACCAGCAACACTACACAA  378

Query  293  A-CC----C--A-A-TCTGTGGAGAAGATATATGTCTTGAACCTCAGTCACCATTTTT-C  342
            | ||    |  | | ||||||||||||  ||||||||||||||||||||||| ||||| |
Sbjct  379  ATCCAAATCATAGAGTCTGTGGAGAAG--ATATGTCTTGAACCTCAGTCACC-TTTTTCC  435

Query  343  CCCGTTTTTGGTGA-TATAATCCAGACATTGTCACGCCATTGTGTAAACGTGGAAGCCAT  401
            |||||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||
Sbjct  436  CCCGTTTTTGGT-ATTATAATCCAGACCTTGTCACGCCATTGTGTAAATGTGGAAGCCAT  494

Query  402  TGTTGATTGGGAAAAGCGTAGGAAAGCAGCAAGAGAGAGA-GGAACTCTGTCTCCACAAG  460
            ||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct  495  TGTTGATTGGGAAAAGCGTAGGAAAGCAGCAAGAGAG-GAAGGAACTCTGTCTCAACAAG  553

Query  461  AGATGAATCTTCTGAGGAATATGGAAAATACCCAAATTGGTCCTACCGGTGGCATCCTTG  520
            |||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct  554  AGATGACTCTTCTGTGGAATATGGAACATACCCAAATTGGTCCCACCGGTGGCATCCTTG  613

Query  521  AAGGATATGAGATTGGAAAAGGAAGCCAGGACGCTCGAGACATGGGACTCTAA  573
            ||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  614  AAGGATATGAGATTGGAAAAGGAAGCCAGGATGCTCGAGACATGGGCCTCTAA  666



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27528312556


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5