BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333412

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63250.1 | Symbols:  | Carbohydrate-binding X8 domain superf...   494    3e-139


> AT5G63250.1 | Symbols:  | Carbohydrate-binding X8 domain superfamily 
protein | chr5:25360121-25360689 REVERSE LENGTH=569
Length=569

 Score =  494 bits (267),  Expect = 3e-139
 Identities = 341/376 (91%), Gaps = 8/376 (2%)
 Strand=Plus/Plus

Query  1    ATGTCTCTATCATTGACACTCCTCCTCTTCATCCTTGTATCTACCGTCTCCGTAACCTCA  60
            |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  50   ATGTCTCTATCATTGACACTCCTCCTCTTCATCCTTGTTTCTACCGTCTCCGTGACCTCA  109

Query  61   ACACAAAGAAA-CCTCTCTCCAGCGGCTGAAAACAAAGGAGTAT-GGTGCGTGGCGAATA  118
            |||| | |||| ||| || || || ||||||||||||||| ||| |||| || |||||||
Sbjct  110  ACACTA-GAAAACCTTTCACCGGCAGCTGAAAACAAAGGA-TATTGGTGTGTAGCGAATA  167

Query  119  ATAAAGCGACAGATGAGCAGCTACAAGCGAATATAGACTGGTGTTGCAGCTACGAAGGAG  178
            | ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  168  AAAAAGCAACAGATGAGCAGCTACAAGCGAATATAGATTGGTGTTGCAGCTACGAAGGAG  227

Query  179  GATTCCGCGATTGTACACCGATCAATCCTGGTGGAGTTTGCTATGAACCAAATACTCTAA  238
            ||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||| 
Sbjct  228  GATTCCGTGATTGTACACAGATCAATCCCGGTGGAGTTTGCTATGAACCAAATACTCTAC  287

Query  239  GAGACCACGCGTCGTACGTAATGAATTTGTATTACCAGAATCTTGGCTCCA-CCAAAGAC  297
            ||||||||||||||||||||||||| || ||||||||||| ||||| |  | ||||||||
Sbjct  288  GAGACCACGCGTCGTACGTAATGAACTTATATTACCAGAACCTTGG-TAGAACCAAAGAC  346

Query  298  CAATGCACTTTCAACGGTACTGGCACCCAGGTT-CGTAAAGACCCAAGCCATGGCGCGTG  356
            |||||||||||||||||| ||||| |  | ||| | ||||||||||||||||| ||||||
Sbjct  347  CAATGCACTTTCAACGGTTCTGGCTCTGAAGTTAC-TAAAGACCCAAGCCATGACGCGTG  405

Query  357  TATTTTCATATCTTAT  372
            ||||||||||||||||
Sbjct  406  TATTTTCATATCTTAT  421



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5