BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333418
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41997.1 | Symbols: LCR51 | low-molecular-weight cysteine-ri... 276 8e-74
> AT2G41997.1 | Symbols: LCR51 | low-molecular-weight cysteine-rich
51 | chr2:17110828-17111207 FORWARD LENGTH=270
Length=270
Score = 276 bits (149), Expect = 8e-74
Identities = 222/256 (87%), Gaps = 10/256 (4%)
Strand=Plus/Plus
Query 1 ATGAAAAGTTTAGTTGCAATTATTTTCACTGCCCTCCTCATCGTATCTTCTGTTCATTGT 60
|||| ||||||| ||||| || ||||||||| ||| |||||||||||||||||||||||
Sbjct 1 ATGACAAGTTTAATTGCATTTCTTTTCACTGTCCTTGTCATCGTATCTTCTGTTCATTGT 60
Query 61 CGTATGACAACTATTAGTACTCCAGGTTATGGAATAAAGCAGGAGGATCGTCGATGCCTC 120
|||||||||||| |||||||||||||||||| ||||||||||||||||||| |||| ||
Sbjct 61 CGTATGACAACTGCTAGTACTCCAGGTTATGGGATAAAGCAGGAGGATCGTCTATGCATC 120
Query 121 CAAGGACCAGAAGGAACAAAATTATGTAGTTCTGGATCA-GTACGCGACTGCCTTAAGTT 179
||||||| |||||||||||| ||||||||||||||| || || |||||||||||||| ||
Sbjct 121 CAAGGACAAGAAGGAACAAAGTTATGTAGTTCTGGAACAAGT-CGCGACTGCCTTAACTT 179
Query 180 TTGTATAATTCGTGGTTATTCTAGTGCCACGTGT-AT--T-A--CTCCTGATGCA-TGTT 232
|||| |||||||||||||| || ||| | ||||| || | | ||| |||| || ||||
Sbjct 180 TTGTTTAATTCGTGGTTATGCTGGTGGCTCGTGTTATGCTTATACTCTTGAT-CAATGTT 238
Query 233 GTTGTCACATTCCTCC 248
|||||| ||||||||
Sbjct 239 GTTGTCGTATTCCTCC 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11611850019
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5