BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333419

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39970.1 | Symbols:  | Mitochondrial substrate carrier famil...   608    1e-173


> AT2G39970.1 | Symbols:  | Mitochondrial substrate carrier family 
protein | chr2:16683832-16686709 REVERSE LENGTH=1415
Length=1415

 Score =  608 bits (329),  Expect = 1e-173
 Identities = 351/362 (97%), Gaps = 0/362 (0%)
 Strand=Plus/Plus

Query  1    ATGTCGGACGCTTTGATCAATGGATTGGCTGGAGCTGGCGGTGGGATCATTGCTCAGCTT  60
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  226  ATGTCGGACGCTTTGATCAATGGATTGGCTGGAGCTGGTGGTGGGATCATTGCTCAGCTT  285

Query  61   CTCACTTATCCTCTTCAAACTGTAAATACGCGCCAACAGACGGAGCGGGATCTGAAAAGG  120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  286  CTCACTTATCCTCTTCAAACTGTAAATACGCGCCAACAGACGGAGCGGGATCTGAAGAGG  345

Query  121  GAGAAGAGGAAACTTGGAACTATCGAACACATGTGTCAGGTTGTCAAACAAGAGGGATGG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  346  GAGAAGAGGAAACTTGGAACTATCGAACACATGTGTCAGGTTGTCAAACAAGAAGGATGG  405

Query  181  GAGAGATTATACGGTGGATTGGCACCGTCTCTCGCTGGAACGGCAGCATCACAGGGTGTG  240
            ||||| ||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct  406  GAGAGGTTATATGGTGGATTGGCGCCGTCTCTTGCTGGAACGGCTGCATCACAGGGTGTG  465

Query  241  TACTACTACTTCTACCAGGTGTTTCGGAATCAAGCTGAAGCCACAGCTCTTGCACGGAAG  300
            ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct  466  TACTACTACTTCTACCAAGTGTTTCGGAATCGAGCTGAAGCCACAGCTCTTGCACGGAAG  525

Query  301  AAGAAAGGGTTGGGTGACGGATCAGTTGGGATGTTTGCTTCACTTTTAGTGGCTGCCTTT  360
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  526  AAGAAAGGTTTGGGTGACGGATCAGTTGGGATGTTTGCTTCACTTTTAGTGGCTGCCTTT  585

Query  361  GC  362
            ||
Sbjct  586  GC  587



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19604422110


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5