BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333427
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial RN... 1267 0.0
AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA... 566 2e-160
> AT3G22330.1 | Symbols: PMH2, ATRH53 | putative mitochondrial
RNA helicase 2 | chr3:7892537-7895366 FORWARD LENGTH=2176
Length=2176
Score = 1267 bits (686), Expect = 0.0
Identities = 791/838 (94%), Gaps = 21/838 (3%)
Strand=Plus/Plus
Query 18 GGAGCATGCTAAAGGAGGAAAATGCATTGTTTTTACACAAACAAAACGAGATGCTGATCG 77
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GGAGCATGCCAAAGGAGGAAAATGCATTGTTTTTACACAAACAAAACGAGATGCTGATCG 1195
Query 78 CCTTTCATATGCATTGGCGAGAAGCTTCAAATGCGAAGCTTTACACGGTGATATATCCCA 137
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1196 CCTTTCATATGCATTGGCTAGAAGCTTCAAATGTGAAGCTTTACACGGTGATATATCCCA 1255
Query 138 GAGTCAGAGGGAAAGAACGCTTGCTGGTTTCCGAGATGGGCATTTCAATATTCTTGTTGC 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GAGTCAGAGGGAAAGAACGCTTGCTGGTTTCCGAGATGGGCATTTCAATATTCTTGTTGC 1315
Query 198 AACTGATGTTGCTGCCCGTGGACTTGATGTGCCTAATGTCGATTTGATCATTCACTATGA 257
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1316 GACTGATGTTGCTGCCCGTGGACTTGATGTACCTAATGTCGATTTGATCATTCACTATGA 1375
Query 258 GCTTCCTAATAACACGGAGACATTTGTTCATCGAACCGGGCGAACGGGTCGTGCTGGAAA 317
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1376 GCTTCCTAATAACACGGAGACATTTGTCCATCGAACCGGGCGAACGGGTCGGGCTGGAAA 1435
Query 318 GAAAGGAAGTGCTATTCTCATCTACAGTCAAGATCAATCCAGGGCTGTAAAAATAATTGA 377
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GAAAGGAAGTGCTATTCTGATCTACAGTCAAGATCAATCCAGGGCTGTAAAAATAATTGA 1495
Query 378 GAGAGAAGTTGGGAGCCGATTCACCGAGCTCCCTAGCATTGCTGTGGAACGTGGAAGCGC 437
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1496 GAGAGAAGTTGGGAGCCGATTCACTGAGCTCCCTAGCATTGCTGTGGAACGTGGAAGCGC 1555
Query 438 AAGCATGTTTGAAGGAATAGGTTCTCGATCCGGTGGGTCCTTTGGAGGAGGCATGAGGGA 497
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1556 AAGCATGTTTGAAGGAATAGGTTCTCGATCCGGTGGTTCCTTTGGAGGAGGCATGAGGGA 1615
Query 498 TCGCGGTTCAAGCTTTGGTGGTCGTTCAGGCGGCGGC--T-ATGGTGGCAGCAGTGGTGG 554
||| ||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 1616 TCGTGGTTCAAGCTTTGGTGGTCGTTCAGGCGGTGGTGGTTATGGTGGCAGCAGTGGTGG 1675
Query 555 CTATGGTGGTGGCCGTTCAGGCGGATCAAGCAACCGTTATTCTGGTGATTCTGACCGTTC 614
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TTATGGTGGTGGGCGTTCAGGCGGATCAAGCAACCGTTATTCTGGTGATTCTGACCGTTC 1735
Query 615 TGGTTTCGGGAGCTTCGGTATGCGTTCTCCTGAAGGATATGGTTCAGATCGTTCTTCTCA 674
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 1736 TGGTTTTGGGAGCTTCGGTATGCGTTCTCCTGAGGGATATGGTTCGGATCGTTCATCTCA 1795
Query 675 GTCAGGTGGAAGGAGCAGCTTTGGTGGTGGTCGTTCAGGTGATTATGGCCGTTCAGGCGG 734
||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 1796 GTCAGGTGGAAGGAGCAGCTTTGGTGGTGGTCGTTCAGG---------C-G----G---- 1837
Query 735 ATCATCAAGCAACCGTTCCTCTGGTTTTGGTGACTTTGGCTCTGACCGTTCTTCTCAGTC 794
|||||||| ||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1838 ATCATCAAACAATCGTTCCTCTGGTTTCGGGGACTTTGGCTCTGACCGTTCTTCTCAGTC 1897
Query 795 AGGCGGAAGGAGCAGCTTTGGTGGGTTTGGCTCAAACGATGGGAAAAGATCATACTGA 852
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1898 AGGCGGAAGGAGCAGCTTTGGTGGGTTTGGATCAAATGATGGGAAAAGATCTTACTGA 1955
> AT3G22310.1 | Symbols: PMH1, ATRH9 | putative mitochondrial RNA
helicase 1 | chr3:7887286-7890019 FORWARD LENGTH=2142
Length=2142
Score = 566 bits (306), Expect = 2e-160
Identities = 426/484 (88%), Gaps = 8/484 (2%)
Strand=Plus/Plus
Query 9 TCTTGTGCAGGAGCAT-GCTAAAGGAGGAAAATGCATTGTTTTTACACAAACAAAACGAG 67
|||||| |||| ||| || |||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1155 TCTTGTAAAGGAACATGGC-AAAGGAGGAAAATGCATTGTCTTTACCCAAACAAAACGTG 1213
Query 68 ATGCTGATCGCCTTTCATATGCATTGGCGAGAAGCT-TCAAATGCGAAGCTTTACACGGT 126
|||| ||||||||| ||| || |||||| | ||||| | ||||| |||||||||||||||
Sbjct 1214 ATGCAGATCGCCTTGCATTTGGATTGGCAAAAAGCTAT-AAATGTGAAGCTTTACACGGT 1272
Query 127 GATATATCCCAGAG-TCAGAGGGAAAGAACGCTTGCTGGTTTCCGAGATGGGCATTTCAA 185
|| ||||| || || |||||| |||||||| |||||||||||| | |||||| ||||||
Sbjct 1273 GACATATCTCA-AGCTCAGAGAGAAAGAACACTTGCTGGTTTCAGGGATGGGAATTTCAG 1331
Query 186 TATTCTTGTTGCAACTGATGTTGCTGCCCGTGGACTTGATGTGCCTAATGTCGATTT-GA 244
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1332 TATTCTTGTTGCAACTGATGTTGCTGCCCGTGGACTTGATGTACCTAATGTCGATTTAG- 1390
Query 245 TCATTCACTATGAGCTTCCTAATAACACGGAGACATTTGTTCATCGAACCGGGCGAACGG 304
| ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||| |
Sbjct 1391 TAATTCATTATGAGCTTCCTAATAACACGGAGACGTTTGTTCACCGAACGGGGCGAACTG 1450
Query 305 GTCGTGCTGGAAAGAAAGGAAGTGCTATTCTCATCTACAGTCAAGATCAATCCAGGGCTG 364
|||||||||||||||||||||| || ||||||||| || ||||||||||| |||||||||
Sbjct 1451 GTCGTGCTGGAAAGAAAGGAAGCGCGATTCTCATCCACGGTCAAGATCAAACCAGGGCTG 1510
Query 365 TAAAAATAATTGAGAGAGAAGTTGGGAGCCGATTCACCGAGCTCCCTAGCATTGCTGTGG 424
| ||||| ||||||| |||||| || ||| |||||| ||||| ||||||||||||||||
Sbjct 1511 TTAAAATGATTGAGAAAGAAGTCGGAAGCAGATTCAATGAGCTGCCTAGCATTGCTGTGG 1570
Query 425 AACGTGGAAGCGCAAGCATGTTTGAAGGAATAGGTTCTCGATCCGGTGGGTCCTTTGGAG 484
|| | |||||||||||||||||||||||| ||||| || |||| |||||||| || ||||
Sbjct 1571 AAAGAGGAAGCGCAAGCATGTTTGAAGGAGTAGGTGCTAGATCTGGTGGGTCGTTCGGAG 1630
Query 485 GAGG 488
||||
Sbjct 1631 GAGG 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5