BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333429
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43285.1 | Symbols: | Putative membrane lipoprotein | chr5:... 239 1e-62
AT5G43513.1 | Symbols: | Putative membrane lipoprotein | chr5:... 224 3e-58
AT5G43510.2 | Symbols: | Putative membrane lipoprotein | chr5:... 222 1e-57
AT5G43525.1 | Symbols: | Putative membrane lipoprotein | chr5:... 217 5e-56
AT5G43516.1 | Symbols: | pseudogene of a defensin-like (DEFL) ... 213 7e-55
AT5G43518.1 | Symbols: | Putative membrane lipoprotein | chr5:... 211 2e-54
> AT5G43285.1 | Symbols: | Putative membrane lipoprotein | chr5:17370475-17370857
REVERSE LENGTH=285
Length=285
Score = 239 bits (129), Expect = 1e-62
Identities = 230/277 (83%), Gaps = 14/277 (5%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttt-tatttttcactcttttaatttttgtttCTTCATGTACATCAAT 59
|||||||||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGAAGTTGA-TTTTTATATTTTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAAT 59
Query 60 ACTTATAAAGGAATCTAGTGGAGAAGAGA-CAGCTAGTTATTTCAATCCGGCAGAAAGTC 118
|||||||||||||||||||| |||||||| | || | ||||||||| | || |||||
Sbjct 60 ACTTATAAAGGAATCTAGTGAAGAAGAGAGAATATA-TCCTTTCAATCCAGTAGCAAGTC 118
Query 119 CTTTCGATCCATATTCATTGAACCATGA-ACTTAAACA-AGATTGGATTGGTTATTGTTT 176
||||||||||| |||| ||||||| | ||||||| | || ||||||||||||||
Sbjct 119 CTTTCGATCCACGTTCACTGAACCA-AATACTTAAA-ATAGGCAAAATTGGTTATTGTTT 176
Query 177 TGATTGCGCAAGAGCTTGTATGAGACGGGGA-ACATATATTATG-AGATGTAATTTGGAA 234
||||||||||||||||||||||||| | | | | |||||| | | ||||| ||| |||
Sbjct 177 TGATTGCGCAAGAGCTTGTATGAGAAGAG-ATAGGTATATTC-GCACATGTAGTTTTGAA 234
Query 235 AGACGTCTTTGTCGTTGCAGT-ATTAGTAAGATTCAT 270
||| ||||||||||||||| || ||| | ||||||
Sbjct 235 AGAAAACTTTGTCGTTGCAGTTAT-AGTCATATTCAT 270
> AT5G43513.1 | Symbols: | Putative membrane lipoprotein | chr5:17477999-17478390
FORWARD LENGTH=297
Length=297
Score = 224 bits (121), Expect = 3e-58
Identities = 224/271 (83%), Gaps = 17/271 (6%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttttatt-tt--tcactcttttaatttttgtttCTTCATGTACATCA 57
||||||||| ||||| |||| || | ||||| |||||||||||||||||||||||||||
Sbjct 22 ATGAAGTTGCCTTTTATATTCTTAATTACTCTATTAATTTTTGTTTCTTCATGTACATCA 81
Query 58 ATACTTATAAAGGAATCTAGTGGA-GAAGAGACAGC-TAGTTATTTCAATCCGGCAGA-A 114
||||||||||| |||||||||| | ||||||| | | || || ||||| ||| || | |
Sbjct 82 ATACTTATAAATGAATCTAGTG-ATGAAGAGAGAACATA-TTCTTTCAGTCCAACA-ACA 138
Query 115 AGTCCTTTCGATCCATATTCA-TTGAACCATGAACTTAAACAA-GATTGGATTGGTTATT 172
|||||||| |||||| ||| || ||||| ||||||||| | | | |||||||| |
Sbjct 139 AGTCCTTTTGATCCACGCTCACTT-AACCAAGAACTTAAA-ATTGGGAGAATTGGTTACT 196
Query 173 GTTTTGATTGCGCAAGAGCTTGTATGAGACGGGG-AACATATATTA-TGAGATGTAATTT 230
|||||||||||||||||||||||||||||||||| || |||||| | | ||||| |||
Sbjct 197 GTTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAG-TATATTCGT-ACATGTAGTTT 254
Query 231 GGAAAGACGTCTTTGTCGTTGCAGTATTAGT 261
|||||| |||||||||||||||||||||
Sbjct 255 TGAAAGAAAACTTTGTCGTTGCAGTATTAGT 285
> AT5G43510.2 | Symbols: | Putative membrane lipoprotein | chr5:17474111-17474478
FORWARD LENGTH=273
Length=273
Score = 222 bits (120), Expect = 1e-57
Identities = 221/268 (82%), Gaps = 14/268 (5%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttttatttttcactcttttaatttttgtttCTTCATGTACATCAATA 60
||||||||| || || |||| || ||||| |||||||||||||||||||||||||||| |
Sbjct 1 ATGAAGTTGCCTATTATATTCTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAACA 60
Query 61 CTTATAAA-GGAATCTAGTGGA-GAAGAGACAGC-TAGTTATTTCAATCCGGCAGA-AAG 116
|||||||| || ||||||| || ||||||| | | || || ||||| ||| || | |||
Sbjct 61 CTTATAAATGG-ATCTAGT-GATGAAGAGAGAACATA-TTCTTTCAGTCCAACA-ACAAG 116
Query 117 TCCTTTCGATCCATATTCATTGAACCATGAACTTAAACA-AGATTGGATTGGTTATTGTT 175
|||||| |||||| ||| ||||||| ||||||||| | | | |||||||| ||||
Sbjct 117 TCCTTTTGATCCACGCTCACTGAACCAAGAACTTAAA-ATTGGGAGAATTGGTTACTGTT 175
Query 176 TTGATTGCGCAAGAGCTTGTATGAGACGGGG-AACATATATTA-TGAGATGTAATTTGGA 233
||||||||||||||||||||||||||||||| || |||||| | | ||||| ||| ||
Sbjct 176 TTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAG-TATATTCGT-ACATGTAGTTTTGA 233
Query 234 AAGACGTCTTTGTCGTTGCAGTATTAGT 261
|||| |||||||||||||||||||||
Sbjct 234 AAGAAAACTTTGTCGTTGCAGTATTAGT 261
> AT5G43525.1 | Symbols: | Putative membrane lipoprotein | chr5:17488149-17488516
FORWARD LENGTH=273
Length=273
Score = 217 bits (117), Expect = 5e-56
Identities = 220/268 (82%), Gaps = 14/268 (5%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttttatttttcactcttttaatttttgtttCTTCATGTACATCAATA 60
||||||||| || || |||| || ||||| ||||||||||||||||||||||||||| ||
Sbjct 1 ATGAAGTTGCCTATTATATTCTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAGTA 60
Query 61 CTTATAAA-GGAATCTAGTGGA-GAAGAGACAGC-TAGTTATTTCAATCC-GGCAGAAAG 116
|||||||| || ||||||| || ||||||| | | || || ||||| ||| | || |||
Sbjct 61 CTTATAAATGG-ATCTAGT-GATGAAGAGAGAACATA-TTCTTTCAGTCCAAG-AGCAAG 116
Query 117 TCCTTTCGATCCATATTCATTGAACCATGAACTTAAACA-AGATTGGATTGGTTATTGTT 175
|||||| |||||| ||| ||||||| ||||||||| | | | |||||||| ||||
Sbjct 117 TCCTTTTGATCCACGCTCACTGAACCAAGAACTTAAA-ATTGGGAGAATTGGTTACTGTT 175
Query 176 TTGATTGCGCAAGAGCTTGTATGAGACGGGG-AACATATATTA-TGAGATGTAATTTGGA 233
||||||||||||||||||||||||||||||| || |||||| | | ||||| ||| ||
Sbjct 176 TTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAG-TATATTCGT-ACATGTAGTTTTGA 233
Query 234 AAGACGTCTTTGTCGTTGCAGTATTAGT 261
|||| |||||||||| ||||||||||
Sbjct 234 AAGAAAACTTTGTCGTTACAGTATTAGT 261
> AT5G43516.1 | Symbols: | pseudogene of a defensin-like (DEFL)
family protein. | chr5:17482275-17482644 FORWARD LENGTH=275
Length=275
Score = 213 bits (115), Expect = 7e-55
Identities = 221/270 (82%), Gaps = 16/270 (6%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttttatt-tt--tcactcttttaatttttgtttCTTCATGTACATCA 57
||||||||| | |||| ||| || | ||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAAGTTG-CCTTTTAATTCTTAATTACTCTATTAATTTTTGTTTCTTCATGTACATCA 59
Query 58 ATACTTATAAAGGAATCTAGTGGA-GAAGAGACAGC-TAGTTATTTCAATCCGGCAGA-A 114
||||||||||| |||||||||| | ||| ||| | || || ||||| ||| || | |
Sbjct 60 ATACTTATAAATGAATCTAGTG-ATGAACAGAGAATATA-TTCTTTCAGTCCAACA-ACA 116
Query 115 AGTCCTTTCGATCCATATTCATTGAACCATGAACTTAAACAA-GATTGGATTGGTTATTG 173
|||||||| |||||| ||| ||||||| ||||||||| | | | |||||||| ||
Sbjct 117 AGTCCTTTTGATCCACGCTCACTGAACCAAGAACTTAAA-ATTGGGAGAATTGGTTACTG 175
Query 174 TTTTGATTGCGCAAGAGCTTGTATGAGACGGGG-AACATATATTA-TGAGATGTAATTTG 231
||||||||||||||||||||||||||||||||| || |||||| | | ||||| |||
Sbjct 176 TTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAG-TATATTCGT-ACATGTAGTTTC 233
Query 232 GAAAGACGTCTTTGTCGTTGCAGTATTAGT 261
|||||| |||||||||||||||||||||
Sbjct 234 GAAAGAAAACTTTGTCGTTGCAGTATTAGT 263
> AT5G43518.1 | Symbols: | Putative membrane lipoprotein | chr5:17484366-17484852
FORWARD LENGTH=392
Length=392
Score = 211 bits (114), Expect = 2e-54
Identities = 219/268 (82%), Gaps = 14/268 (5%)
Strand=Plus/Plus
Query 1 ATGAAGTTG-ACttttttatttttcactcttttaatttttgtttCTTCATGTACATCAAT 59
|||||| || ||| | |||| || ||||| |||||||||||||||||||||||||||||
Sbjct 69 ATGAAG-TGTCCTTCTATATTCTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAAT 127
Query 60 ACTTATAAAGGAATCTAGTGGA-GAAGAGACAGC-TAGTTATTTCAATCCGGCAGA-AAG 116
||||||||| |||||||||| | ||| ||| | || || ||||| ||| || | |||
Sbjct 128 ACTTATAAATGAATCTAGTG-ATGAACAGAGAATATA-TTCTTTCAGTCCAACA-ACAAG 184
Query 117 TCCTTTCGATCCATATTCATTGAACCATGAACTTAAACAA-GATTGGATTGGTTATTGTT 175
|||||| |||||| ||| ||||||| ||||||||| | | | |||||||| ||||
Sbjct 185 TCCTTTTGATCCACGCTCACTGAACCAAGAACTTAAA-ATTGGGAGAATTGGTTACTGTT 243
Query 176 TTGATTGCGCAAGAGCTTGTATGAGACGGGG-AACATATATTA-TGAGATGTAATTTGGA 233
||||||||||||||||||||||||||||||| || |||||| | | ||||| ||| ||
Sbjct 244 TTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAG-TATATTCGT-ACATGTAGTTTTGA 301
Query 234 AAGACGTCTTTGTCGTTGCAGTATTAGT 261
|||| |||||||||||||||||||||
Sbjct 302 AAGAAAACTTTGTCGTTGCAGTATTAGT 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12516669501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5