BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333433

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G80620.1 | Symbols:  | S15/NS1, RNA-binding protein | chr1:3...   529    7e-150


> AT1G80620.1 | Symbols:  | S15/NS1, RNA-binding protein | chr1:30305362-30307417 
FORWARD LENGTH=1522
Length=1522

 Score =  529 bits (286),  Expect = 7e-150
 Identities = 300/307 (98%), Gaps = 0/307 (0%)
 Strand=Plus/Plus

Query  7     TATTTCCACCCGGATAACATGTCATCTGCGGAGAAGATGAAAATCGAGCTTGCAAAGGTC  66
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  979   TATTTCCATCCGGATAACATGTCATCTGCGGAGAAGATGAAAATCGAGCTTGCAAAGGTC  1038

Query  67    AGAGAAGAGTTCAAGATGTCAGAATCGGATTGTGGTTCTGCACGTGTTCAAGTGGCACAA  126
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1039  AGAGAAGAGTTCAAGATGTCAGAATCGGATTGTGGTTCTGCACGTGTTCAAGTGGCGCAA  1098

Query  127   CTGACCACTAAGATCAAGCATCTATCCTCGGTTCTACACAAAAAGGACAAGCATTCGCGG  186
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1099  CTGACCACTAAGATCAAGCATCTATCCTCGGTTCTACATAAAAAGGACAAGCATTCGCGG  1158

Query  187   AAAGGACTTATAGCAATGGTGCAGAGACGGAAGAAACTGTTGAAGTATATGAGACGAACG  246
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct  1159  AAAGGACTTATAGCAATGGTGCAGAGACGGAAGAAGCTGTTGAAGTATATGAGAAGAACG  1218

Query  247   GACTGGGATTCTTACTGCCTTTCACTGTCAAAACTCGGCCTTCGCGACAACCCAGATTAC  306
             |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct  1219  GACTGGGATTCTTACTGCCTTTCACTGTCAAAACTCGGCCTTCGTGACAACCCGGATTAC  1278

Query  307   AAGTTTT  313
             |||||||
Sbjct  1279  AAGTTTT  1285



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14627914959


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5