BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333453
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02040.1 | Symbols: | C2H2-type zinc finger family protein ... 1260 0.0
> AT1G02040.1 | Symbols: | C2H2-type zinc finger family protein
| chr1:358104-359078 REVERSE LENGTH=975
Length=975
Score = 1260 bits (682), Expect = 0.0
Identities = 768/807 (95%), Gaps = 15/807 (2%)
Strand=Plus/Plus
Query 1 ATGCATGGAGTCATGAACTCGTCATGCATTGATTTCGTAATGTTCAGTCGCGGACAACAC 60
|||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 172 ATGCATGGAGCCATGAACTCACCATGCATTGATTTCGTAATGTTCAGTCGTGGACAACAC 231
Query 61 GATGAGGACAACATGTCACGTCG---TCCATGGAAGAGGGAGAGATCGATGCCCACTCAG 117
||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||
Sbjct 232 GATGAGGACAACATGTCACGTCGTCCTCCGTGGAAGAGGGAGAGATCGATGTCCACTCAG 291
Query 118 CATCATCATCATCTTAACTTGTCTCCAAACGAAGATGAGGAGCTCGCCAACTGTCTTGTG 177
|||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 292 ---CATCATCATCTTAACTTGTCTCCAAACGAAGACGAAGAGCTTGCCAACTGTCTTGTC 348
Query 178 TTGTTGTCCAATTCAGGGGATGCGCA---TGGTGATCATCATAAACAACATGGACATGGT 234
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 349 TTGTTGTCCAATTCAGGGGATGCGCATGGTGGTGATCAGCATAAACAACATGGACATGGT 408
Query 235 AAGGGCAAAACCGTCaaaaagcaaaaaaCCGCTCAGGTTTTCCAATGCAAAGCTTGCAAG 294
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 409 AAGGGCAAAACCGTCAAAAAGCAAAAAACCGCCCAGGTTTTCCAATGCAAAGCTTGCAAG 468
Query 295 AAGGTGTTCACGTCGCATCAGGCATTGGGTGGACACAGGGCAAGCCACAAGAAAGTGAAG 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AAGGTGTTCACGTCGCATCAGGCATTGGGTGGACACAGGGCAAGCCACAAGAAAGTGAAG 528
Query 355 GGTTGTTTTGCCTCTCaagataaagaagaggaagaggaagaggaatacaaagaagacgac 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GGTTGTTTTGCCTCTCAAGATAAAGAAGAGGAAGAGGAAGAGGAATACAAAGAAGACGAC 588
Query 415 gacgag---gacgaggacgaagatgaggaggagga--ag-aagacAAATCAACGGCTCAC 468
||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 589 GACGACAACGACGAGGACGAAGATGAGGAGGAGGATGAGGAAGACAAATCAACGGCTCAT 648
Query 469 ATCGCAAGAAAGAGATCCAACGCTCACGAGTGCACCATCTGCCATCGCGTCTTCTCTTCG 528
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 649 ATCGCAAGAAAGAGATCCAACGCTCACGAATGCACCATCTGCCATCGCGTCTTCTCTTCG 708
Query 529 GGACAGGCCTTGGGAGGCCACAAGAGATGCCATTGGCTAACACCTTCCAATTATCTTCGT 588
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 709 GGACAGGCCTTAGGAGGCCACAAGCGATGCCATTGGCTAACACCTTCCAATTATCTTCGT 768
Query 589 ATGACGTCGCTCCACGATCATCACCATTCCGTCGGTAGACCGCAGCCGTTAGATCAACCA 648
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 769 ATGACGTCGCTCCACGATCATCATCATTCCGTCGGCAGACCGCAGCCGTTAGATCAACCA 828
Query 649 TCTCTCGATCTCAACTTAGCTTGCCAAGAGTATTCCGTTGATCCAACGGCCATGAGCGTA 708
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 829 TCTCTCGATCTCAACTTAGCTTGCCAAGAATATTCCGTCGATCCAACGGCCATGAGCGTA 888
Query 709 GGGATGATCGAGAGAGATGGTGGTGGCAATAGTCACAACGCCACTTCATCTTCATGGTTA 768
||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 889 GGGATGATCGAGAGAGATGGTGGTGGCAATAATCACAACGCTACTTCATCTTCGTGGTTA 948
Query 769 AAACTCGCAAGTGGTGATTGGTCTTGA 795
|||||||||||||||||||||||||||
Sbjct 949 AAACTCGCAAGTGGTGATTGGTCTTGA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5