BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333455
Length=2619
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02020.1 | Symbols: | nitroreductase family protein | chr1:... 2523 0.0
AT1G02030.1 | Symbols: | C2H2-like zinc finger protein | chr1:... 725 0.0
> AT1G02020.1 | Symbols: | nitroreductase family protein | chr1:352637-354969
REVERSE LENGTH=2258
Length=2258
Score = 2523 bits (1366), Expect = 0.0
Identities = 1629/1751 (93%), Gaps = 38/1751 (2%)
Strand=Plus/Plus
Query 894 ttcttcttcttcGCTTGAATTGGTTCTCAAGTACCACAACCAGACGAAGCACTCCTTCAC 953
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 316 TTCCTCCTCTTCGCTTGAATTGGTCCTCAAGTACCACAACCAGACGAAGCACTCCTTGAA 375
Query 954 CGGTTACGCGAGAGGTCCTCGTGGTCTCGACTGGGCCAATCAGCCTAATCCCTTCCGCCG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 CGGTTACGCGAGAGGTCCTCGTGGTCTCGACTGGGCCAATCAGCCTAATCCCTTCCGCCG 435
Query 1014 TTACCTCTCTGCTCCTCTTCTGCCTCTCCAACACCCCAATCACGACGAT-GACGACAACG 1072
|||||||||||||||||||| |||||||||||||||||||||||| || |||||| ||
Sbjct 436 GTACCTCTCTGCTCCTCTTCTTCCTCTCCAACACCCCAATCACGAC-ATCGACGACGACT 494
Query 1073 ACGACTCTCCTCTCTACTGTTGTTTATTCGACTCGCTTCCTCCGCCCAAACCCAtctctc 1132
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 495 CCGACTCTCCTCTCTACTCTACTCTATTCGACTCGCTTCCTCCGCCCAAACCCATCTCTC 554
Query 1133 -tcgctaccatctctcaccttttctaccattctctcgctctctcCGCCTGGAAGACCACC 1191
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TTC-CTACAATCTCTCACCTTTTCTACCATTCTCTCGCTCTCTCCGCCTGGAAGACCACC 613
Query 1192 GGATCCTCCACCTGGCCCCTCCGCGTCAACCCCAGCAGCGGTAACTTGCATCCCACCGAG 1251
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GGATCCTCCACGTGGCCCCTCCGCGTCAACCCCAGCAGCGGTAACTTGCATCCCACCGAG 673
Query 1252 GCCTATCTCATTGCTCCTCCCATCCCTTCCCTCTCCCAATCCGCTTTCGTCGCCCACTAT 1311
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 674 GCCTATCTCATTGCTCCTCCCATCCCTTCCCTCTCCCAATCCGCTTTCGTCTCCCACTAT 733
Query 1312 GCTCCCAAAGAGCATTCTTTGGAGGTTAGAGCTCACATCCCCTCTTCC----T------- 1360
|||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 734 GCTCCCAAAGAGCATTCTTTGGAGGTTAGAGCTCACATCCCCTCTTCCTTTTTCCCCAAC 793
Query 1361 TT-TTCCCGGAGAATTCTTTTCTCATCGGCATTTCTTCTATCTTCTGGCGTGAAGCTTGG 1419
|| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 794 TTCTTCCCGGAGAATTCTTTTCTCATCGGAATTTCTTCAATTTTCTGGCGTGAAGCTTGG 853
Query 1420 AAGTACGGAGAACGAGCGTTTCGGTACTGTAACCACGACGTCGGCCACGCCATTGCCGCT 1479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 854 AAGTACGGAGAACGAGCGTTTCGTTACTGTAACCACGACGTCGGCCACGCCATTGCCGCT 913
Query 1480 CTCTCCATTGCAGCCGCAGAGCTTGGCTGGGACTTGAAGCTTCTCGACGGC-TTCGGAGC 1538
|||||||||||||||||||| || |||||||||||||||||||||||| || ||||||||
Sbjct 914 CTCTCCATTGCAGCCGCAGACCTAGGCTGGGACTTGAAGCTTCTCGAC-GCTTTCGGAGC 972
Query 1539 TGATGATCTCAAGAGGCTTATGGGGCTCCCTGAATTTCAGATACCTTCTTCTTCAGGTAA 1598
|||||||||||||||||||||||| ||||| ||||||||| ||||| | ||||||
Sbjct 973 TGATGATCTCAAGAGGCTTATGGGTCTCCCCGAATTTCAGTTACCTGAAGGTAAAGGTAA 1032
Query 1599 AGGTAAGCTCCCTGAGATTGAATTCGAGCATCCTGACTGCTTGCTCCTTGTTTTCCCCAA 1658
|| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1033 AGCTGAGCTCCCTGAGATTGAATTCGAGCATCCTGACTGCTTACTCCTTGTTTTCCCCAA 1092
Query 1659 CGGAACTAGTAGAGGAGATCTCAACTTAGACTACCTCGGTATTAGCTCTGCCCTAAGAGA 1718
|||||||||||||| | ||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1093 CGGAACTAGTAGAGAACATCTCAACTTAGACTACCTCGCAATTAGCTCTGCCCTTAGAGA 1152
Query 1719 CTTCCCAAGCCTAGAGTGGAATGGAAACCCCAATACTCTGAGCAAAGAGCATCTGTGTTG 1778
||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1153 CTTCCCAAGCCTAGAATGGACTGGAAACCCCAATACTCTGAGCAAAGAGCATTTGTGTTG 1212
Query 1779 GGATATCATCTATAGGACAGCCAAGGCTGTAGAAAAGCCTTCATTGATCTACT-CA--AC 1835
|||||||||||| ||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 1213 GGATATCATCTACAGGACAGCCAAGGCTGTAGAAAAGCCTCCATTGATCTACTCCACCTC 1272
Query 1836 ATCTTCTTC-ATT--TGATGCTCCCTTCACAAGCA---GTGCTCTGTTTAGCCACACTTC 1889
|||||||| ||| || |||| |||||||||||| |||||||||||||||||| |||
Sbjct 1273 TTCTTCTTCAATTGATGTTGCTTCCTTCACAAGCAGTCGTGCTCTGTTTAGCCACAGTTC 1332
Query 1890 TTATAACAAGTTAACGGCCAGGCAAGTTGTAAGGACGAGAAGAAGTGCTGTTGATATGGA 1949
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ATATAATAAGTTAACGGTGAGGCAAGTTGTAAGGACGAGAAGAAGTGCTGTTGATATGGA 1392
Query 1950 CGCTGTTACTTGTATAGACATGTCTGCGTTTTACCAGATATTGATGCACTGTCTTCCTTC 2009
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| | |
Sbjct 1393 CGCTGTTACTTGTATAGACATGTCTTCGTTTTACCAGATGCTGATGCACTGTCTT-C--C 1449
Query 2010 TGGCTCCACGAGAGGGGAGCCCCAAAAAGAGCAACTTGCGCTGCCGTTTCGAGCTCTTCC 2069
| ||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 T---TCCAC---AGGCGAGTCCCAAAAAGAGCAACTTGCGCTGCCGTTTCGAGCTCTTCC 1503
Query 2070 TTGGGATACTGCTGAGGTTCATCTTGCCTTGTTTGTTCACAGAGTTTTGGGTTTACCAAA 2129
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||
Sbjct 1504 TTGGGATACTGCTGAGGTTCATCTTGCCTTGTTTGTTCACAGAGTTTCGGGTTTGCCTAA 1563
Query 2130 GGGACTGTACT-TCCTAGTCAGAAACGAGGATCATCTCAGCGATCTCAAGACAGCTACGA 2188
||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1564 GGGACTGTA-TCTCCTAGTCAGAAACGAGGATCATCTCAGTGATCTCAAGACAGCTACGA 1622
Query 2189 GGCCTGAATTTGAGTGGAAGAAACCAGATGGATGCCCAGCCAATCTTCCTCTATACAAGC 2248
|||||||||||||||||| |||||||||||||| || | |||||||||||| |||||||
Sbjct 1623 GGCCTGAATTTGAGTGGACTAAACCAGATGGATGTCCGGACAATCTTCCTCTGTACAAGC 1682
Query 2249 TCACCGAGGGTGATTGCCAGAAGCTGGCAAAAGGGCTATCATGTCATCAGGACATTGCAG 2308
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1683 TCGCCGAGGGTGATTGCCAGAGGCTGGCAAAAGGGCTATCATGTCATCAGGACATTGCAG 1742
Query 2309 GGGATGGATGCTTCAGCCTAGGTATGGTAGCTCGGTTTGAACCAGCGCTGCGGGAGAAGG 2368
||||||||||||||||| |||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 1743 GGGATGGATGCTTCAGCTTAGGCATGATAGCTCGGTTTGAACCAGCACTGCGGGAGAAGG 1802
Query 2369 GCTCATGGGTGTACCCTCGACTGTTCTGGGAGACGGGTGTTATTGGGCAAGTTTTGTACC 2428
|||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1803 GCTCATGGATGTACCCTCGACTGTTCTGGGAGACGGGTGTTGTTGGACAAGTTTTGTACC 1862
Query 2429 TGGAAGCGCACGCAATGGGGATCTCAGCAACCGGGATAGGGTGCTATTTCGATGATCCAG 2488
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1863 TGGAAGCACACGCAATGGGGATCTCAGCAACCGGGATTGGGTGCTATTTCGATGATCCAG 1922
Query 2489 TGCACGAGGTTCTGGGGATAAAAGACTCTAGCTTTCAGAGTCTGTACCATTTCACTGTGG 2548
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1923 TGCACGAGGTTCTGGGGATTAATGACTCTAGCTTTCAGAGTCTGTACCATTTCACTGTGG 1982
Query 2549 GAGGTCCAGTTGTAGACAAGCGGATCATGACTCTTCCTGCTTATCCTGGTCCTACCACCA 2608
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1983 GAGGTCCAGTTGTAGACAAGCGGATCATGACTCTTCCTGCTTATCCTGGTCCCACCACCA 2042
Query 2609 CCGTTGCCTAG 2619
|||||||||||
Sbjct 2043 CCGTTGCCTAG 2053
> AT1G02030.1 | Symbols: | C2H2-like zinc finger protein | chr1:355321-357258
REVERSE LENGTH=1938
Length=1938
Score = 725 bits (392), Expect = 0.0
Identities = 681/803 (85%), Gaps = 90/803 (11%)
Strand=Plus/Plus
Query 1 ATGGAAGAGAGGCATAAGTGCAAGTTATGTTGGAAGAGCTTCGCTAATGGAAGGGCTTTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 ATGGAAGAGAGGCATAAGTGCAAGTTATGTTGGAAGAGCTTCGCTAATGGAAGGGCTTTG 1130
Query 61 GGAGGTCACATGAGGTCTCACATG------------CTCCCGAGTCAGCCCGAGTCAGCT 108
|||||||||||||||||||||||| ||||| ||||||||||||||| |
Sbjct 1131 GGAGGTCACATGAGGTCTCACATGCTCATTCACCCTCTCCCCAGTCAGCCCGAGTCATAT 1190
Query 109 TCATCTTCCATGGCCGATCCA---------CTCCCGGACAGAGAGAGTGAAACCGAATCG 159
|| ||||||||||| |||||| || | ||||||||||||||||||||| |||
Sbjct 1191 TCGTCTTCCATGGCTGATCCAGGGTTTGTTCTTCAGGACAGAGAGAGTGAAACCGAGTCG 1250
Query 160 TCCAAGAAGCCCACCCGC-AA--A--C-GA--T--CC--AG----A-CT--T-A--AC-- 195
|||||||||||| ||||| || | | || | || || | || | | ||
Sbjct 1251 TCCAAGAAGCCCTCCCGCAAACGATCCAGACTTAACCGGAGATCCATCTCATCATTACGT 1310
Query 196 C--GGA-GATCCAACGAAGAAGGGAAAAGTGAAACCGCAGGAGCAGCAGAGGTGAAGATC 252
| | ||||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 1311 CATCAACAATCCAACGAAGAAGGGAAAAGTGAAACCGCAAGAGCAGCAGATATCAAGATC 1370
Query 253 GGGGTTCAAGAACTCAGTGAGTCGTGTACCGAGCAGGAACCGATGAGCTCGGTGT-GTGA 311
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | ||
Sbjct 1371 GGGGTTCAAGAACTCAGTGAGTCGTGTACGGAGCAGGAACCGATGAGTTCGGTGTCG-GA 1429
Query 312 CGCTGCAACAGA-GGAAGAAGACGTGGCCTTGAGTCTCATGTTGCTGTCGAGAGACAAGT 370
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 CGCTGCAACA-ACGGAAGAAGACGTGGCCTTGAGTCTCATGTTGCTGTCGAGAGACAAGT 1488
Query 371 GGGAGAAGGAGG-AGA-G--AG-G--G-A-AGA-AT--------------AATAAGTGGT 406
|||||||||||| ||| | || | | | ||| || ||||||||||
Sbjct 1489 GGGAGAAGGAGGAAGAGGAAAGTGATGAAGAGAGATGGAAGAAGAAGAGGAATAAGTGGT 1548
Query 407 TCGAGTGCGAGACTTGCGAGAAAGTGTTTAAGTCGTATCAGGCGTTAGGTGGACACAGAG 466
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1549 TCGAGTGCGAGACTTGCGAGAAAGTGTTTAAGTCGTATCAGGCGTTAGGGGGACACAGAG 1608
Query 467 CAAGCCACAGgaagaagagagcagaaacagatcaattagtctcagatgagttgaagaaga 526
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1609 CAAGCCACAAGAAGAAGATAGCAGAAACAGATCAATTAGGCTCAGATGAGTTGAAGAAGA 1668
Query 527 agaagaa-aa-ag-aCTAGT---CACCATGAATGTCCAATCTGTTGC-AAGGTCTTCTCA 579
||||||| || || |||||| ||||||||||||||||||||| || || |||||| ||
Sbjct 1669 AGAAGAAGAAGAGTACTAGTAGTCACCATGAATGTCCAATCTGT-GCCAAAGTCTTCACA 1727
Query 580 TCTGGTCAAGCTCTTGGAGGTCACAAAAGATCTCACGCTTCGGCCAGCAATGATGAATCC 639
|||||||||||||| |||||||||||||||||||||||||| || | | | |||||| |
Sbjct 1728 TCTGGTCAAGCTCTCGGAGGTCACAAAAGATCTCACGCTTCCGCTA--A-TAATGAATTC 1784
Query 640 ACGATCAGAAGATCAGGAATAATAATCAGCTTGATAGATCTAAATCTTCCAGCGCCATCG 699
|||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1785 ACGA---GAAGATCAGGAATAATAATTAGCTTGATAGATCTAAATCTCCCAGCGCCATCG 1841
Query 700 GAGGAGGAAGACATGGCCTCGTC 722
||||||||||| |||||||||||
Sbjct 1842 GAGGAGGAAGAGATGGCCTCGTC 1864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130032716256
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5