BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333465

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01940.1 | Symbols:  | Cyclophilin-like peptidyl-prolyl cis-...   804    0.0  


> AT1G01940.1 | Symbols:  | Cyclophilin-like peptidyl-prolyl cis-trans 
isomerase family protein | chr1:323027-324917 FORWARD 
LENGTH=736
Length=736

 Score =  804 bits (435),  Expect = 0.0
 Identities = 467/483 (97%), Gaps = 0/483 (0%)
 Strand=Plus/Plus

Query  1    ATGTCGGTAACTTTGCACACGAATCTGGGTGATATCAAGTGCGAAATCTTCTGTGACGAG  60
            ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  56   ATGTCGGTAACTTTGCACACGAACCTGGGTGACATCAAGTGCGAAATCTTCTGTGACGAG  115

Query  61   GTTCCCAAGAGTGCCGAGAACTTTTTGGCGTTATGTGCTAGCGGCTACTACGATGGTACT  120
            |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  116  GTTCCCAAGAGTGCTGAGAACTTTTTGGCGTTGTGTGCTAGTGGCTACTACGATGGTACT  175

Query  121  ATCTTTCATAGAAATATCAAAGGGTTCATGATTCAAGGAGGAGACCCCAAGGGGACCGGG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  176  ATCTTTCATAGAAATATCAAAGGGTTCATGATTCAAGGAGGAGACCCCAAGGGGACCGGA  235

Query  181  AAAGGAGGAACTAGCATCTGGGGCAAGAAATTCAATGATGAGATCCGAGAGTCCCTTAAG  240
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  236  AAAGGAGGAACTAGCATCTGGGGCAAGAAATTCAATGATGAGATCCGAGACTCCCTTAAG  295

Query  241  CACAATGCAAGAGGGATGTTGTCAATGGCAAACAGTGGTCCAAACACCAATGGAAGCCAG  300
            |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct  296  CACAATGCAAGAGGGATGCTGTCAATGGCAAACAGCGGTCCAAACACCAACGGAAGCCAG  355

Query  301  TTCTTCATAACCTACGCAAAGCAACCACATCTCAATGGATTATACACCATCTTTGGCAAA  360
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  356  TTCTTCATAACCTATGCAAAACAACCACATCTCAATGGATTATACACCATCTTTGGCAAA  415

Query  361  GTCATTCATGGCTTTGAAGTTCTTGACATTATGGAAAAGACTCAAACAGGACCAGGAGAT  420
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  416  GTCATTCATGGCTTCGAAGTGCTTGACATTATGGAAAAGACTCAAACAGGACCAGGAGAT  475

Query  421  AGGCCGCTTGCTGAAATAAGGCTAAACCGTGTAACGATCCACGCCAATCCACTTGCTGGT  480
            |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  476  AGGCCGCTTGCTGAGATAAGGCTAAACCGTGTGACGATCCACGCCAATCCACTTGCTGGT  535

Query  481  TAA  483
            |||
Sbjct  536  TAA  538



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23007239326


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5