BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333489
Length=2886
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01660.1 | Symbols: | RING/U-box superfamily protein | chr1... 2848 0.0
AT1G01670.1 | Symbols: | RING/U-box superfamily protein | chr1... 1483 0.0
> AT1G01660.1 | Symbols: | RING/U-box superfamily protein | chr1:240057-242608
REVERSE LENGTH=1707
Length=1707
Score = 2848 bits (1542), Expect = 0.0
Identities = 1652/1707 (97%), Gaps = 0/1707 (0%)
Strand=Plus/Plus
Query 1180 ATGGCGGAACTCATTGCCATGGGCAATGATGTTGTTCATGTTGCAGTTAAGAGTGATGTC 1239
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCGGAACTCATGGCCATGGGCAATGATGTTGTTCATGTTGCAGTGAAGAGTGATGTC 60
Query 1240 AGAGAGAGCAGATCAACTCTTCTTTGGGCTTTGAGGAACCTCGGGGCTAAGAAAGTCTGC 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGAGAGCAGATCAACTCTTCTTTGGGCTTTGAGGAACCTCGGGGCTAAGAAAGTCTGC 120
Query 1300 ATCCTCCATGTTTATCAGCCAAAAACAGCTTCTCCGGCTGCTCGCAAGCTGGAAGAATTG 1359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 ATCCTCCATGTTTATCAGCCAAAAACAGCTTCTCCGGCTGCTCGCAAGCTTGAAGAATTG 180
Query 1360 GAGGCTATCATGTACGAGACATTACATGATTATTTTGATTTTTGTCAACAAGAAGGGGTG 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGGCTATCATGTACGAGACATTACATGATTATTTTGATTTTTGTCAACAAGAAGGGGTG 240
Query 1420 AATGAGGACGATATTTACGTATCATGTATAGAGATGAACGATGTGAAGCAGGGGATACTA 1479
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATGAGGACGATATTTACATATCATGTATAGAGATGAACGATGTGAAGCAGGGGATACTA 300
Query 1480 GAACTCATCCATGAGGGCAAAATCAAGAAGCTCGTCATGGGAGCTGCATCAGGTCATCAT 1539
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 GAACTCATCCATGAGAGCAAAATCAAGAAGCTCGTCATGGGAGCTGCATCAGATCATCAT 360
Query 1540 TATTCAGAGAAGATGTTCGATCTCAAATCAAGAAAGGCAAAATATGTTTACCAACATGCG 1599
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 361 TATTCAGAGAAGATGTTCGATCTCAAATCAAGAAAGGCAAAGTATGTTTACCAACACGCG 420
Query 1600 CCTAACTCCTGCGAGGTTATGTTTATGTGTGACGGACATCTCATCTACAGAAAGGAAGCC 1659
|| | ||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 421 CCCAGCTCGTGCGAGGTTATGTTTATGTGTGATGGACATCTCATCTACACAAAGGAAGCC 480
Query 1660 AATCTTGAAGACTGTGTGGATGAAACAGAATCCGGAGCTGGACAATCCAAACCGAAGCTC 1719
||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 481 AATCTTGAAGACTGTATGGGTGAAACAGAATCCGAAGCTGGACAATCCAAACCGAAGCTC 540
Query 1720 TTTTCCTCGGCTTCACCGAAATGCTCTGCAGAACTAGTTTCTGCAATTGTAGCGTACATT 1779
| |||||| |||||||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 541 TATTCCTCTGCTTCACCGAAATGCTCTGCAGAATTAGTCTCTGCAATTGTAGCTTACATT 600
Query 1780 GACACAAGGAGAGACAGAGATATGTTAGAGCCAACTGCATCAGAGGATCAATCTGAAAGC 1839
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 601 GACACAAGGAGAGACAGAGATATGTTGGAGCCAAATGCATCAGAGGATCAATCTGAAAGC 660
Query 1840 GAAAGGAATGATCAACTGTATAGACAGCTTAAGCAAGCACTTATGGAAGTTGAGGAATCG 1899
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GACAGGAATGATCAACTGTATAGACAGCTTAAGCAAGCACTTATGGAAGTTGAGGAATCG 720
Query 1900 AAAAGAGAAGCTTATGAAGAGTGTGTCAGGCGGTTTAAAGCTGAAAATACAGCCGTTGAG 1959
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAAAGGGAAGCTTACGAAGAATGTGTCAGGCGGTTTAAAGCTGAAAATACAGCCGTTGAG 780
Query 1960 GCCATTCGCAGAGCAAGAGAGTACGAGGCCATGTACAATGAAGAGGCGAAGCTAAGGAAA 2019
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 GCCATTCGCAGTGCAAGAGAGTACGAGGCCATGTACAACGAAGAGGCGAAGCTAAGGAAA 840
Query 2020 GAAGGTAAAGAAGCATTAGCGAAGCAGAGGAAAATGGTGGAGAAGACTAAACAAGAGAGG 2079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAAGGTAAAGAAGCATTAGCGAAGCAGAGGAAAATGGTGGAGAAGACTAAACAAGAGAGG 900
Query 2080 GATGACGCGCTAATCATCATTCTAAATGGAAGAAAGCTATACAATGAGGAACTAAGACGC 2139
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 901 GACGACGCGCTAATCATCATTCTAAATGGAAGGAAGCTATACAATGAGGAACTGAGACGC 960
Query 2140 AGAGTTGAAGCTgaagagatgttgggaaaagagaaagaagaacacgagaaaactaagaag 2199
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 961 AGAGTTGAAGCTGAAGAGATGTTGGGGAAAGAGAAAGAAGAACACGAGAGAACTAAGAAG 1020
Query 2200 gagatcgaagaagTGCGAGCCATTGTTCAGGATGGTACTCTGTACAACGAGCAGCTGAGA 2259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAGATCGAAGAAGTGCGAGCCATTGTTCAGGATGGTACTCTGTACAACGAGCAGCTGAGA 1080
Query 2260 CAAaggaaggagatggaggaatctatgaagagacaagaggaagagcttgagaagacaaag 2319
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CATAGGAAAGAGATGGAGGAATCTATGAAGAGACAAGAGGAAGAGCTTGAGAAGACAAAG 1140
Query 2320 aaggagaaggaagaagCGTGCATGATAAGCAAGAACTTGATGCAGCTATATgaagacgag 2379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAGGAGAAGGAAGAAGCGTGCATGATAAGCAAGAACTTGATGCAGCTATATGAAGACGAG 1200
Query 2380 gtgaggcagaggaaagaaacagaggagttggtgaagagaagaagagaggagctagagaaa 2439
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GTGAGGCAGAGGAAAGAGGCAGAGGAGTTGGTGAAGAGAAGAAGAGAGGAGCTAGAGAAA 1260
Query 2440 gtgaagaaggagaaggaagaagCTTGCTCTGTAGGACAAAACTTCATGAGGTTATATGAA 2499
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1261 GTGAAGAAGGAGAAGGAAGAAGCTTGCTCTGTAGGACAAAACTTCATGAGGTTGTATGAA 1320
Query 2500 GAAGAAGCAAGACGTAGAAAAGGAACAGAGGAAGAACTCAGCAAGGTGGCGGCTGAGAAA 2559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GAAGAAGCAAGACGTAGAAAAGGAACAGAGGAAGAACTCAGCAAGGTGGCGGCTGAGAAA 1380
Query 2560 GACGCAGCGAGCTCAGTCTGTTCGGAGATTCTATTACTCCTTCAGAGTTACACTCGTCGC 2619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GACGCAGCGAGCTCAGTCTGTTCGGAGATTCTATTACTCCTTCAGAGTTACACTCGTCGC 1440
Query 2620 CATGGGATTCCTTCTGGATTCTCGGATGAGGACTCCGTTACACGCCAGCCTCCCTCATAT 2679
||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1441 CATGGAACTCCTTCTGGATTCTCCGATGAGGATTCCGTTACACGCCAGCCTCCCTCATAT 1500
Query 2680 TTCATATGTCCTATCTCACAGGAAGTAATGAGAGAGCCTCGTGTTGCAGCGGATGGTTTT 2739
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1501 TTCATATGTCCTATCTCACAGGAAGTAATGCGAGAGCCTCGTGTTGCAGCCGATGGTTTC 1560
Query 2740 ACCTATGAAGCTGAATCCTTAAAAGAATGGCTCGACAATGGTCACGAGACCTCACCAATG 2799
||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1561 ACCTATGAAGCTGAATCTTTAAGAGAATGGCTCGATAATGGTCACGAGACCTCACCAATG 1620
Query 2800 ACAAACCTGAGGCTCGCCCACAACAACCTAGTCCCCAACCACGCCCTTCGTTCCGCCATT 2859
|||||||||| |||||||||||||||||| ||||| || ||||||||||||||||| |||
Sbjct 1621 ACAAACCTGAAGCTCGCCCACAACAACCTTGTCCCGAATCACGCCCTTCGTTCCGCGATT 1680
Query 2860 CAGGAGTGGCTCCAACGAAACTCTTGA 2886
||||||||||| |||||||||||||||
Sbjct 1681 CAGGAGTGGCTACAACGAAACTCTTGA 1707
> AT1G01670.1 | Symbols: | RING/U-box superfamily protein | chr1:242843-245988
REVERSE LENGTH=1411
Length=1411
Score = 1483 bits (803), Expect = 0.0
Identities = 962/1036 (93%), Gaps = 22/1036 (2%)
Strand=Plus/Plus
Query 41 CAGTAAGCGAAGACGTTGATGAAAGTAGATCGACTTTGTTATGGGCATTGAGGACTCTTC 100
|||||||||||||||||||| ||||||||| ||||||||||||||| |||| ||||||||
Sbjct 110 CAGTAAGCGAAGACGTTGATCAAAGTAGATTGACTTTGTTATGGGCTTTGAAGACTCTTC 169
Query 101 GAGTGAAGAAGCTTCACCTTCTTCACGTTTACCAGCTCATTTCGATGACACCTTCATCGA 160
||| ||| |||||||||||||| || ||| | ||||||||||| ||||| |||||||| |
Sbjct 170 GAGCGAAAAAGCTTCACCTTCTCCATGTTCATCAGCTCATTTCCATGACCCCTTCATCAA 229
Query 161 GTGGGCTGGAACAAAGCGAGATCGATGCAATCCAGGAGTTGGAACAGACTAGTAGAAATG 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GTGGGCTGGAACAAAGCGAGATCGATGCAATCCAGGAGTTGGAACAGACTAGTAGAAATG 289
Query 221 ATACCCTTCTCAAATATCATGATATCTGCATAGATGAAGGAGTTATTGAACAAGATGTGG 280
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 ATACCCTTCTCAAGTATCATGATATCTGCATAGATGAAGGAGTTATTGAACAAGATGTGG 349
Query 281 ATATGTCATATTTTTCTGCAAATAATGTCGGGGAATGGATTGTGGAACTTATCTATCAAA 340
||||||||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 350 ATATGTCATGTTTTTCAGCAAATAGTGTGGGGGAATGGATTGTGGAACTTATCTATCAAA 409
Query 341 ACAATATCAAGAAGCTTATCATGGGAGCAACTGCTGATTCCCACTACTCCGAGGGCATGG 400
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 410 ACAATATCAAGAAGCTTATCATGGGAGCAACTGCTGATTCACACTACTCCGAGGGCATGG 469
Query 401 TTCATATCCCATCTACAAAAGCTGAGTACGTGATCCGACACGCGCCTCATTGCTGTAACA 460
|||||||| || ||||||||||||| |||||||| | ||| ||||| |||||||||||||
Sbjct 470 TTCATATCACACCTACAAAAGCTGACTACGTGATTCAACATGCGCCCCATTGCTGTAACA 529
Query 461 TATGGCTTGTATGTAATGGTAACCTCATCCAAACGAGGGAGGGACGGTTTGAACATGCAG 520
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 530 TATGGCTTGTATGTAATGGAAATCTCATCCAAACGAGGGAGGGACGGTTCGAACATGCAG 589
Query 521 GTTCAGCGTACTCCTCCTCTGAATCCTCAAGCAGCCTTCATAGCCTTGATTCTGCTCCGA 580
||||||||||||| | ||||||||||||||||||||| |||||||||||| ||
Sbjct 590 GTTCAGCGTACTC--------A-TCCTCAAGCAGCCTTCATAGCATTGATTCTGCTCTGA 640
Query 581 TACCATATGGGGGAGCAGGAAGAGCTGAACGTGTTACCCAGCCACATGCCTTGTCATCAT 640
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 641 TACCATATGGGGGTGCAGGAAGAGCTGAACGTGTTACCGAGCCACATGCCTTGTCATCAT 700
Query 641 CTGAAGAACTATCAGCTAGAGGGTTTGAGACGATGTATTATGAGGAGCAGAGACGGAGAT 700
||||||||| ||||||||||||| |||||| |||||||| |||||||||||||||||||
Sbjct 701 CTGAAGAACAATCAGCTAGAGGGATTGAGAAAATGTATTACGAGGAGCAGAGACGGAGAT 760
Query 701 TGGAAATTGAGGAACTAAAGAGAGAAAAGGAGCAACGTGATAAGATGAGGCGTG-AAGCA 759
|||||||||||||| |||||||||| |||||||| || |||||||||||||||| ||| |
Sbjct 761 TGGAAATTGAGGAATTAAAGAGAGAGAAGGAGCAGCGCGATAAGATGAGGCGTGTAAG-A 819
Query 760 GAGGATGCACTCTCTAGTTCCTT-TGGTGTCTCTCAGATACTGTACAATGAAGAAGTAAT 818
||||| |||||||| ||||| || ||||||| || |||||||||||||||||||||||||
Sbjct 820 GAGGAAGCACTCTCAAGTTC-TTCTGGTGTCACTAAGATACTGTACAATGAAGAAGTAAT 878
Query 819 TCGCAGGAGAGAAGTGGAGGCGGAACTAAACAGAGCAAAAGCAGAAATAGAAGATATGAA 878
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GCGCAGGAGAGAAGTGGAGGCGGAACTAAACAGAGCAAAAGCAGAAATAGAAGATATGAA 938
Query 879 AAGGGTCCAAAAGGAACTTGAAGAACAGCATTATGCTGATTGCCGTCTGTTAGAAATGTT 938
||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 939 AAGGGTCCAAATTGAACTTAAAGAACAGCATTATGCTGATTGCCGTCTGTTAGA---G-- 993
Query 939 CCAGAAAGAGCGAGACGAAGCTATCAAGACAACTGAAGAGCTTTTAAGAGCTTTGGAGAA 998
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 --A-AA-GAGCGAGACGAAGCTATCAAGACAACTGAAGAGCTTTTAAGAGCTTTGGAGAA 1049
Query 999 GGGTGAGTCATCAATCCCGTTGCAATGGTCTGTTTCCAACGAGCCTCCCCAATGTTTCAT 1058
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1050 GGGTGAGTCATCAATCCCGTTGCAGTGGTCTGTTTCCATCGAGCCTCCCCAATGTTTCAT 1109
Query 1059 ATGTCCCATTTCAAAG 1074
||||||||||||||||
Sbjct 1110 ATGTCCCATTTCAAAG 1125
Score = 104 bits (56), Expect = 5e-21
Identities = 56/56 (100%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1073 AGCCGATGGTTACACCTATGAAGCAGATGAGTTCAGAAGATGGCTCAATCACGGAG 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 AGCCGATGGTTACACCTATGAAGCAGATGAGTTCAGAAGATGGCTCAATCACGGAG 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143427290037
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5