BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333508

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01470.1 | Symbols: LEA14, LSR3 | Late embryogenesis abundan...   732    0.0  


> AT1G01470.1 | Symbols: LEA14, LSR3 | Late embryogenesis abundant 
protein | chr1:172146-172948 REVERSE LENGTH=727
Length=727

 Score =  732 bits (396),  Expect = 0.0
 Identities = 437/457 (96%), Gaps = 2/457 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGAGCTTGCTAGATAAAGCCAAGGATTTCGTGGCGGATAAACTCACCACGATCCCT  60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct  123  ATGGCGAGCTTGCTAGATAAAGCCAAGGACTTCGTGGCGGATAAACTCACCGCGATCCCT  182

Query  61   AAACCGGAGGGTTCGGTTACGGACGTTGACCTTAAAGACGTGAACCGTGACTCCGTCGAG  120
            |||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||
Sbjct  183  AAACCGGAGGGTTCAGTTACGGACGTTGACCTCAAAGACGTGAACCGTGACTCAGTTGAG  242

Query  121  TACTTGGCCAAAGTCTCCGTCACCAATCCTTACAGTCATTCGATTCCGATCGGCGAGATC  180
            ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct  243  TACTTGGCCAAAGTCTCTGTCACCAATCCTTACAGTCATTCGATTCCGATCTGTGAGATC  302

Query  181  AGTTTCACTTTCCACAGCGCCGGCAGGGAGATTGGAAAGGGAAAGATACCGGACCCGGGT  240
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  303  AGTTTCACTTTCCACAGCGCCGGCAGGGAGATTGGAAAGGGGAAGATACCGGACCCGGGT  362

Query  241  TCTCTGAAAGCTAATGACATGACGGCTCTTGATATT-CCGATGGTTGTGCCGTATAGTAT  299
            |||||||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct  363  TCTCTGAAAGCTAAGGACATGACGGCTCTTGATATTCCCG-TGGTGGTGCCGTATAGTAT  421

Query  300  ACTGTTTAACCTGGCTCGAGACGTTGGTGTGGACTGGGACATTGACTACGAGCTCCAAAT  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  422  ACTGTTTAACCTGGCTCGAGACGTTGGTGTGGACTGGGACATTGACTACGAGCTCCAAAT  481

Query  360  CGGTCTAACCATTGATCTTCCTGTTGTCGGGGAATTTACTATCCCTATTTCTAGTAAGGG  419
            |||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct  482  CGGTCTAACCATCGACCTTCCTGTTGTAGGGGAATTTACTATCCCTATCTCTAGTAAGGG  541

Query  420  CGAAATCAAGCTTCCTACTTTTAAAGATTTCTTCTGA  456
             |||||||| |||||||||||||||||||||||||||
Sbjct  542  AGAAATCAAACTTCCTACTTTTAAAGATTTCTTCTGA  578



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21715667568


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5