BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333513

Length=951
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47389.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   276    3e-73


> AT1G47389.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 12 Blast hits 
to 12 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:17378652-17379374 FORWARD 
LENGTH=723
Length=723

 Score =  276 bits (149),  Expect = 3e-73
 Identities = 317/393 (81%), Gaps = 31/393 (8%)
 Strand=Plus/Plus

Query  449  TTGTCCGTGTGATGATTATGTGGTTCATTCACGGTGTTTTTCCGGGTATGCTCGG-CGTT  507
            |||||||||||||||| || ||||||||||||||||||||||||||||||| ||| | ||
Sbjct  155  TTGTCCGTGTGATGATAATATGGTTCATTCACGGTGTTTTTCCGGGTATGCCCGGTC-TT  213

Query  508  TTCGA-TCTGG-AGACAATAATTGTTGACAGCGATTTAGTGAAAATTTGCAATCC-TCGA  564
             || | ||||| || ||||| |||   ||| || |||| || ||||||||   || ||||
Sbjct  214  CTC-AGTCTGGCAG-CAATAGTTGCCAACATCGTTTTAATGCAAATTTGC-GCCCTTCGA  270

Query  565  TGCATATGGGATCCCGGAATTACATCGAAGGCATATGTCGTGAAGATCTCCAACGACGTC  624
             |||| ||| | |||||||| || ||| || ||| || |||||||||||| ||| |||||
Sbjct  271  CGCATGTGGAACCCCGGAATCACTTCGGAGACATTTGCCGTGAAGATCTCTAACAACGTC  330

Query  625  TATGGTGTGGA-ATGTA-CAATAGGATGGGCTTACACCGGTATCAAGCCAAACTTTTTGC  682
            | |||| | || |||||  ||| ||||||| ||||  |||||||||||||||  |||| |
Sbjct  331  TTTGGT-TTGAGATGTATGAAT-GGATGGGATTACTTCGGTATCAAGCCAAA--TTTT-C  385

Query  683  T--TCGTGCA--ATGGCACCGATATGGACTAATTGGTATCGGA-ATGTCGAGATTAT-AA  736
            |  | | |||  ||| |||||||| ||||||||||||||| ||  ||||| | || | ||
Sbjct  386  TAAT-GGGCACTATGACACCGATACGGACTAATTGGTATC-GAGTTGTCG-GTTTCTCAA  442

Query  737  AACTCAT-TACAGGAGCAACGAG-TTTATTCTATGTGATGTGGAGTTTCAAACAAAGAAT  794
            ||||  | | ||||||||||||| |||  | |||||||||||||||||||||||||||||
Sbjct  443  AACT-TTCTCCAGGAGCAACGAGCTTT-GTGTATGTGATGTGGAGTTTCAAACAAAGAAT  500

Query  795  GCCAATAAGGCAT-CTGTATCACACTCGAAGTA  826
            ||||||| ||||| |  ||||||| |||| |||
Sbjct  501  GCCAATATGGCATACA-TATCACATTCGA-GTA  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46516820122


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5