BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333518

Length=966
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01400.1 | Symbols:  | unknown protein; Has 21 Blast hits to...   167    2e-40


> AT1G01400.1 | Symbols:  | unknown protein; Has 21 Blast hits 
to 21 proteins in 8 species: Archae - 0; Bacteria - 2; Metazoa 
- 2; Fungi - 1; Plants - 13; Viruses - 0; Other Eukaryotes 
- 3 (source: NCBI BLink). | chr1:150689-152210 REVERSE LENGTH=1145
Length=1145

 Score =  167 bits (90),  Expect = 2e-40
 Identities = 127/144 (88%), Gaps = 5/144 (3%)
 Strand=Plus/Plus

Query  453  ACCGGGCTCTGCTCAT-ACAAGATATAGAATAAGACTGCCAGTTTTCAAAGAGCTTTGCT  511
            |||||||||||| | |  ||||| ||  || |||||| ||||||||| | ||| ||||||
Sbjct  388  ACCGGGCTCTGC-CTTCCCAAGACAT--AA-AAGACTACCAGTTTTCGATGAGGTTTGCT  443

Query  512  CGGGTGTGGAGTTTCAATGGTATGGACCGCAAGAACCAGACTTGCCTTCTTCATCTGGAA  571
            |||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  444  CGGGTGCGGTGTTTCCATGGTATGGACCGCAAGAACCAGACTTGCCTTCTTCATCTGGAA  503

Query  572  AAGGAACCATCTCAGCAAACAGTC  595
             ||||||||| |||||||||||||
Sbjct  504  TAGGAACCATGTCAGCAAACAGTC  527


 Score =  163 bits (88),  Expect = 3e-39
 Identities = 123/140 (88%), Gaps = 2/140 (1%)
 Strand=Plus/Plus

Query  697  GATGATAGTCGCACC-AGTGAAGTAGCTTATCCTAAACTAAGCATAGAAAGACAAAGGAA  755
            |||||| ||||| || | |||| |||||||||||  || ||||| ||| | |||||| ||
Sbjct  530  GATGATCGTCGCGCCTA-TGAATTAGCTTATCCTTTACCAAGCAGAGATATACAAAGCAA  588

Query  756  AAAGGATCTGAGGAGTGCTCACCTCAAAACTCCCACAGCCACTCACAGCAACACTACTAC  815
            |||||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  589  AAAGGAGCTGAGGAATGCTCACCTCAAAACTCCCACAGCCACTCTCACCAACACTACTAC  648

Query  816  CACAACCACCCATGGCTCCA  835
            |||||||| |||||||||||
Sbjct  649  CACAACCATCCATGGCTCCA  668



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 47270332327


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5