BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333544
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01110.2 | Symbols: IQD18 | IQ-domain 18 | chr1:52239-54692 ... 2477 0.0
AT4G00820.1 | Symbols: iqd17 | IQ-domain 17 | chr4:349116-35155... 617 8e-176
AT4G14750.1 | Symbols: IQD19 | IQ-domain 19 | chr4:8470381-8472... 91.6 2e-17
> AT1G01110.2 | Symbols: IQD18 | IQ-domain 18 | chr1:52239-54692
FORWARD LENGTH=1782
Length=1782
Score = 2477 bits (1341), Expect = 0.0
Identities = 1509/1590 (95%), Gaps = 12/1590 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAAAAAGAACGGCTCTTCTTCTTGGCTTACCGTCGTG-AAA-CGAGCTTTCCGAT 58
|||||||||||||||||||||||||||||||| |||| | || ||| |||||||||||||
Sbjct 1 ATGGGGAAAAAGAACGGCTCTTCTTCTTGGCTCACCG-C-TGTAAAGCGAGCTTTCCGAT 58
Query 59 CTCCGACCAAGAAAGATCATAATAACGACGTCgaagaagatgaggaaaagaagagagaga 118
||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 59 CTCCGACGAAGAAAGATCATAGTAATGACGTCGAAGAAGATGAAGAAAAGAAGAGAGAGA 118
Query 119 agagaCGGTGGTTTAGAAAACCGGCGACTCAAGAATCTCCGGTGAAGTCTTCCGGTATCT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGAGACGGTGGTTTAGAAAACCGGCGACTCAAGAATCTCCGGTGAAGTCTTCCGGTATCT 178
Query 179 CTCCGCC-GCCACCACCTCAAGAATCAGTTAACGCAAACTCACAAA-CTTCTCCGGAGAC 236
|||| || | |||| | |||| ||| |||||| ||||||| ||| | |||||||||||
Sbjct 179 CTCCACCAG-CACCTCAGGAAGATTCACTTAACGTAAACTCA-AAACCCTCTCCGGAGAC 236
Query 237 AGCACCGAGTTACGCAACGACGACGCCGTTATCGAACGCCGG-AAACCCTCCGTCCGCCG 295
|||||||||||||||||| ||||||||| ||| |||||||| |||||| ||||||||||
Sbjct 237 AGCACCGAGTTACGCAACTACGACGCCGCCATCCAACGCCGGTAAACCC-CCGTCCGCCG 295
Query 296 TCGTCCCCATCGCCACGTCAGCATCTAAGACACTCGCACCGAGAAGGATTTATTACGCAA 355
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 296 TAGTCCCCATCGCCACGTCAGCATCTAAGACACTCGCACCGAGGCGGATTTATTACGCAA 355
Query 356 GAGAAAATTACGCTGCTGTTGTTATCCAGACTTCTTTCAGAGGATATTTGGCAAGAAGAG 415
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 356 GAGAAAATTACGCTGCTGTTGTCATCCAGACTTCTTTCAGAGGATATTTGGCAAGAAGAG 415
Query 416 CATTAAGAGCATTAAAAGGGTTAGTGAAGCTACAAGCATTGGTGAGGGGTCATAATGTGA 475
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 416 CATTAAGAGCATTAAAAGGGTTAGTGAAGCTACAAGCATTGGTGAGGGGACATAATGTGA 475
Query 476 GAAAACAAGCCAAAATGACATTAAGGTGTATGCAAGCTCTGGTTCGAGTCCAGTCTCGTG 535
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 GAAAGCAAGCTAAAATGACATTAAGGTGTATGCAAGCTCTGGTTCGAGTCCAGTCTCGTG 535
Query 536 TGCTTGACCAACGCAAACGCTTGTCTCATGACGGTAGTCGCAAATCCGCGTTCAGCGACT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 536 TGCTTGACCAACGCAAACGCTTGTCTCATGACGGTAGTCGCAAATCCGCGTTCAGTGACT 595
Query 596 CTCACGCTGTTTATGAATCTCGATATCTTCAAGAGATATCAGATCGACAATCCATGTCAA 655
|||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 596 CTCACGCTGTTTTTGAATCTCGCTATCTTCAAGATTTGTCAGATCGACAATCCATGTCAA 655
Query 656 GAGAAGGAAGCAGCGCCGCGGAAGATTGGGATGACCGACCACACACGATAGACGAAGTGA 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 656 GAGAAGGAAGCAGCGCCGCGGAAGATTGGGATGACCGACCACACACGATAGACGCAGTGA 715
Query 716 AAGCGATGCTACAACGGAGACGGGACACAGCATTGAGACATGAGAAGACTAATTTGTCTC 775
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 716 AAGTGATGCTACAACGGAGACGGGACACAGCATTGAGACATGACAAGACTAATTTGTCAC 775
Query 776 AAGCTTTCTCTCAACATATGTGGAGAACGGTTCGTAACCAATCCGTGGGAGGAGACCACG 835
|||||||||||||| | |||||||| |||||| ||||||||||| || |||| ||||||
Sbjct 776 AAGCTTTCTCTCAAAAGATGTGGAGGACGGTTGGTAACCAATCCACGGAAGGACACCACG 835
Query 836 AGGTGGAACTTGAGGAGGAAAGACCAAAATGGCTTGACCGGTGGATGGCTACTAGACCGT 895
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 836 AGGTAGAACTTGAAGAGGAAAGGCCAAAATGGCTTGACCGGTGGATGGCTACTAGACCGT 895
Query 896 GGGATAAACGAGCTAGTAGTAGAGCTTCGGTTGACCAAAGGATTTCAGTTAAAACCGTTG 955
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 896 GGGATAAACGAGCTAGTAGTAGAGCTTCGGTTGACCAAAGGGTTTCAGTTAAAACCGTTG 955
Query 956 AAATCGACACTTCTCAGCCTTACTCAAGAACAAGAACAGGAAGCCCGAGTCGTAGCCAAA 1015
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 956 AAATCGACACTTCTCAGCCTTACTCAAGAACAGGAGCAGGAAGCCCGAGTCGTGGCCAAA 1015
Query 1016 GACCTAGTTCCCCATCAAGAACTAGCCACCATTACCAATCCCGCAATAATTTCTCAGCCA 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GACCTAGTTCCCCATCAAGAACTAGCCACCATTACCAATCCCGCAATAATTTCTCAGCCA 1075
Query 1076 CTCCATCTCCGGCTCAGTCTAGACCAATACATATTCGGTCAGCTAGTCCACGGTGCCAGA 1135
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1076 CTCCATCTCCGGCTAAGTCTAGACCAATACTTATTCGGTCAGCTAGTCCACGGTGCCAGA 1135
Query 1136 GAGACCCGAGGGAAGACCGGGACCGAGTAGCTTATAGTTACACATCAAACACACCAAGCT 1195
||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||
Sbjct 1136 GAGACCCGAGGGAAGACCGTGACCGAGCAGCTTATAGTTATACATCAAACACACCAAGCT 1195
Query 1196 TGAGATCTAACTATAGTTTCACAGCTAGGAGTGGATGTAGCATTAGTACCACAATGGTTA 1255
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TGAGATCCAATTATAGTTTCACAGCTAGGAGTGGATGTAGCATTAGTACCACAATGGTTA 1255
Query 1256 ATAATGCATCATTGTTGCCTAATTACATGGCTAGTACGGAGTCGGCTAAGGCGAGGATCC 1315
||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct 1256 ATAATGCATCATTGTTGCCTAATTACATGGCGAGTACAGAGTCAGCTAAAGCGAGGATCC 1315
Query 1316 GGTCTCAGAGCGCACCGAGGCAACGAG-CCTCAACTCCCGAGAGGGACCGTGCGGGTTTG 1374
||||||| || |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1316 GGTCTCATAGTGCACCGAGGCAACG-GCCCTCAACTCCCGAGAGGGACCGTGCGGGTTTG 1374
Query 1375 GTCAAGAAACGGCTCTCGTACCCTGTACCCCCGCCAGCGGAATATGAGGACAATAATAGC 1434
|||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct 1375 GTCAAGAAACGGCTCTCGTATCCGGTACCACCGCCAGCGGAGTATGAGGACAATAATAGC 1434
Query 1435 TTAAGGAGTCCAAGCTTTAAGAGTGTGGCTGGTTCACATTTTGGTGGAATGTTAGAGCAG 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TTAAGGAGTCCAAGCTTTAAGAGTGTGGCTGGTTCACATTTTGGTGGAATGTTAGAGCAG 1494
Query 1495 CAATCGAATTACTCTTCATGTTGCACTGAGTCTAATGGTATTGAGATCTCTCCAGCTTCT 1554
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1495 CAATCGAATTACTCTTCATGTTGCACTGAGTCTAACGGTGTTGAGATCTCTCCAGCTTCT 1554
Query 1555 ACTAGTGACTTTAGGAATTGGCTTAGATGA 1584
||||||||||||||||||||||||||||||
Sbjct 1555 ACTAGTGACTTTAGGAATTGGCTTAGATGA 1584
> AT4G00820.1 | Symbols: iqd17 | IQ-domain 17 | chr4:349116-351550
FORWARD LENGTH=2032
Length=2032
Score = 617 bits (334), Expect = 8e-176
Identities = 948/1226 (77%), Gaps = 116/1226 (9%)
Strand=Plus/Plus
Query 351 CGCAAGAGAAAATTACGCTGCTGTTGTTATCCAGACTTCTTTCAGAGGATATTTGGCAAG 410
|||||||||| ||||||| |||||||| ||||| ||| ||||||||| |||||||||||
Sbjct 568 CGCAAGAGAAGATTACGCAGCTGTTGTAATCCAAACTGGTTTCAGAGGCTATTTGGCAAG 627
Query 411 AAGAGCATTAAGAGCATTAAAAGGGTTAGTGAAGCTACAAGCATTGGTGAGGGGTCATAA 470
|||||||||||||||||| |||||| |||||||| |||||||| | ||||| ||||| ||
Sbjct 628 AAGAGCATTAAGAGCATTGAAAGGGCTAGTGAAGTTACAAGCACTAGTGAGAGGTCACAA 687
Query 471 TGTGAGAAAACAAGCCAAA-ATGACATTAAGGTGTATGCAAGCTCTGGTTCGAGTCCAGT 529
|||||| || ||||| ||| ||||| |||||||||||||||||||| ||||||||||| |
Sbjct 688 TGTGAGGAAGCAAGC-AAAGATGACTTTAAGGTGTATGCAAGCTCTAGTTCGAGTCCAAT 746
Query 530 CTCGTGTGCTTGACCAACGCAAACGCTTGTCTCATGACGGTAGTCGCAAATCCGCGTTCA 589
||||||||||||||||||| |||||||||||||| || |||||||||||||| || ||||
Sbjct 747 CTCGTGTGCTTGACCAACGGAAACGCTTGTCTCACGATGGTAGTCGCAAATCTGCCTTCA 806
Query 590 GCGACTCTCAC-GCTGTT-TATGAATCTCGATATCTTCAAGAGATATCAGATC-GACA-A 645
||||| |||| | ||| | |||||||| ||||||||||| |||||||| | || | |
Sbjct 807 GCGACACTCAAAG-TGTGCTC-GAATCTCGTTATCTTCAAGAAATATCAGA-CAGA-AGA 862
Query 646 TCCATGTCAAGAGAAGGAAGCAGCGCCGCGGAAGATTGGGATGACCGACCACACACGATA 705
|||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 863 TCCATGTCAAGAGAAGGAAGTAGCATTGCGGAAGATTGGGATGATCGACCACACACGATT 922
Query 706 GACGAAGTGAAAGCGATGCTACAACGGAGACGGGACACA-GCATTGAGACATGAGAAG-A 763
|| ||||||||||| ||| | |||| ||||| |||| | || ||||||| ||||| | |
Sbjct 923 GAGGAAGTGAAAGCAATGTTGCAACAAAGACGAGACA-ATGCGTTGAGACGTGAGA-GTA 980
Query 764 -CTAAT--T-TGTCTCAAGCTTTCTCTCAACATATGT-GGAGAACG-GTTCGTAACCAAT 817
| ||| | | || |||||||||||||| || | | ||||||| | ||| | |
Sbjct 981 AC-AATAGTATATCACAAGCTTTCTCTCACCAGGT-TCGGAGAACAAGAG-GTAGTTATT 1037
Query 818 CCGTGGGAGGAGACCACGAGGTGGAACTTGAGGAGGAAAGACCAAAATGGCTT-GACCGG 876
| | ||||||| ||| | | | || || || ||||| |||||| || ||| |
Sbjct 1038 C--TAC-AGGAGAC---GAG-T--A--T-GAAGAAGAGAGACCGAAATGG-TTAGACAGA 1084
Query 877 TGGATGGCTACTAGACCGTGGGATAAACGAGCTAGTA-GTAGAGCTTCG-GTTGACCAAA 934
||||||||| ||| ||||||||||||||||||| | | || | | || ||||
Sbjct 1085 TGGATGGCTTCTAAACCGTGGGATAAACGAGCTTCAACG--GATCAAAGAGT--ACCACC 1140
Query 935 GGATTTCAGTTAAAACCGTTGAAATCGACACTTCTCAGCCTTACTCAA---G----AACA 987
|| ||| | |||||||| || ||||| |||||||| || || | || | |||
Sbjct 1141 GG-TTT-AC--AAAACCGTGGAGATCGATACTTCTCAACCGTATTTAACCCGCGGTAACT 1196
Query 988 --AGAACAGG---AAGCCCGAGTCGTAGCCAAAGACCTAGTTCCCCATCAAGAACTAGCC 1042
||||| || ||| || || ||||||||||| |||||||| |||||||| || ||||
Sbjct 1197 CGAGAACCGGTGCAAGTCCAAGCCGTAGCCAAAGGCCTAGTTCACCATCAAGGACCAGCC 1256
Query 1043 ACCATTACCAATCC-CGCAATAATT-TC-TCAGCCACTCCATCTCCGGCTCAGTCTAGAC 1099
||||||||||| | | |||| || || ||||| || |||||||||||| | |||||||
Sbjct 1257 ACCATTACCAA-CAACACAAT--TTCTCATCAGCTACACCATCTCCGGCTAAATCTAGAC 1313
Query 1100 CAATACATATTCGGTCAGCTAGTCCACGG-TGCCAGAGAGACCCGAGGGAAGACCGGGAC 1158
| ||||| ||||| || |||||||| ||| | ||| | ||| || | | | || |
Sbjct 1314 CGATACAAATTCGATCCGCTAGTCCGCGGAT-CCA-A-AGA---GATG-AT--C-GGT-C 1362
Query 1159 CGAGTAGCTTATAGTTACACATCAAACACACCAAGCTTGAGATCTAACTATAGTTTCACA 1218
| ||| | | | | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1363 AGCGTA-C--A-ACT-ACACATCAAACACACCTAGCTTGAGATCTAACTATAGTTTCACA 1417
Query 1219 GCTAGGAGTGGATGTAGCATTAGTACCAC-A--A-TGGT--TA-ATAATGCAT-CATTGT 1270
|| || ||||| | ||| || ||||||| | | | | || | ||||| | |||||
Sbjct 1418 GCAAGAAGTGGTTATAGTGTTTGTACCACTACTACTACTGCTACA-AATGC-TGCATTG- 1474
Query 1271 TGCCTAATTACATGGCTAGTACGGAGTCGGCTAAGGCGAGGATCCGGTCTCAGAGCGCAC 1330
|| || |||||||| | |||||| || |||||||| || |||||||||||||| ||||
Sbjct 1475 --CCAAACTACATGGCGATTACGGAATCTGCTAAGGCTAGAATCCGGTCTCAGAGTGCAC 1532
Query 1331 CGAGGCAACGAGCCT-CAACTCCCGAGAGGGACCGTG-CGGGTTTGGTCAAGAAA-CGGC 1387
| |||||||| |||| |||| ||||||| || ||| | | || | | ||||| ||||
Sbjct 1533 CAAGGCAACG-GCCTTCAACACCCGAGAAAGAACGTATCAG-TTCAG-CTAGAAAACGGC 1589
Query 1388 TCTCGTACCCTGTACC-CC-C-GCCAGCGG-AATATGAGGACAATAATAGCTTAAGGAGT 1443
| |||| || || || || | ||| || | || ||| | | | | || |||||||||
Sbjct 1590 TTTCGTTTCCAGTTCCACCGCTGCC-GCAGCAA-ATG-G-ATGGTCAGAGTTTAAGGAGT 1645
Query 1444 CCAAGCTTT-AAGAGTGT-GGCTGGTTCACATTTTGGTGGAATGTTAGAGCAGCAATCGA 1501
||||| ||| |||||| | || ||| ||||| || |||| | || | | || ||||| |
Sbjct 1646 CCAAG-TTTCAAGAGTATAGG-TGGCTCACAATTGGGTGCATTGG-A-A-CAACAATCAA 1700
Query 1502 ATTACTCTTCATGTTGCACTGAGTCT 1527
|||||||||| ||||| |||||||||
Sbjct 1701 ATTACTCTTCTTGTTGTACTGAGTCT 1726
> AT4G14750.1 | Symbols: IQD19 | IQ-domain 19 | chr4:8470381-8472187
FORWARD LENGTH=1516
Length=1516
Score = 91.6 bits (49), Expect = 2e-17
Identities = 96/117 (82%), Gaps = 10/117 (9%)
Strand=Plus/Plus
Query 401 ATTTGGC-AAGAAGAGCATTAAGAGCATTAAAAGGGTTAGTGAAGCTACAAGCATTGGTG 459
||||||| | ||| |||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 421 ATTTGGCGAGGAA-AGCATTAAGAGCATTAAAAGGGTTAGTGAAATTACAAGCACTAGTG 479
Query 460 AGGGGTCATA-ATGTGAGAAAACAAGCCAAAA--TGACA-TTAAGGTGTATGCAAGC 512
|| |||||| | || || |||||||| || | | ||| ||| | |||||||||||
Sbjct 480 AGAGGTCATTTA-GTAAGGAAACAAGC-AACAGCT-ACACTTA-GATGTATGCAAGC 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5