BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333554
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01010.1 | Symbols: ANAC001, NAC001 | NAC domain containing ... 750 0.0
AT1G01020.1 | Symbols: ARV1 | Arv1-like protein | chr1:5928-873... 152 8e-36
> AT1G01010.1 | Symbols: ANAC001, NAC001 | NAC domain containing
protein 1 | chr1:3631-5899 FORWARD LENGTH=1688
Length=1688
Score = 750 bits (406), Expect = 0.0
Identities = 573/648 (88%), Gaps = 34/648 (5%)
Strand=Plus/Plus
Query 753 AGGATCTTTTAACCCTCTCCTTGAGTATGATTTAGCAAATCACGGTGGTCAGTGGTTGAG 812
|||||| || ||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 804 AGGATCATTCAACCCTCTCCTTGAGTATGATTTTGCAAATCACGGCGGTCAGTGGCTGAG 863
Query 813 TGACTATATCAACCTACAACAACAAGTTCCTTACTTGGCCCCTTATGAAAATGAGTCGGA 872
|||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 864 TGACTATATCGACCTGCAACAGCAAGTTCCTTACTTGGCACCTTATGAAAATGAGTCGGA 923
Query 873 GATGATTTGGAAGTC-TGTGGTTGAAGAAAATTTTGAGTCTTTAATTGATGAAAGGACAT 931
||||||||||||| | |||| |||||||||||||||||| ||| | |||||||||||||
Sbjct 924 GATGATTTGGAAG-CATGTGATTGAAGAAAATTTTGAGTTTTTGGTAGATGAAAGGACAT 982
Query 932 CTATGCAAGAGCATTACAGTGATTACCGGCCaaaaaaaCCTGTGACTGGGGTTTTGCCTG 991
|||||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||||
Sbjct 983 CTATGCAACAGCATTACAGTGATCACCGGCCCAAAAAACCTGTGTCTGGGGTTTTGCCTG 1042
Query 992 ATGATAGCAGTGATACTGAAATTGGCTCAATGATTTTCGAAGACACTTCAAGCTCGACTG 1051
||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1043 ATGATAGCAGTGATACTGAAACTGGATCAATGATTTTCGAAGACACTTCGAGCTCCACTG 1102
Query 1052 ATAGTGTTGGTAGTTCAGATGAACCGTGCCATACTCCTATAGATGATATTCAACCATTGA 1111
|||||||||||||||||||||||||| ||||||||| |||||||||||||| | ||||||
Sbjct 1103 ATAGTGTTGGTAGTTCAGATGAACCGGGCCATACTCGTATAGATGATATTCCATCATTGA 1162
Query 1112 ACACTAGTAAGCCTTCGCACAATTATGAGGCACAAGAGCAACCAAAGCAGTTGAAATTGC 1171
||| || | |||||| |||||||||| ||||||||||||||||||||||| | |
Sbjct 1163 ACATTATTGAGCCTTTGCACAATTATAAGGCACAAGAGCAACCAAAGCAGC--A----G- 1215
Query 1172 CGTATCAGAACAAAGAAAAGGTGATATA-TTCTCAGAAAAGCGAATACGAGTGGAAAATG 1230
| | |||||||||||||||| | ||| ||||||||||||| |||||||||||||
Sbjct 1216 ---A---G--CAAAGAAAAGGTGATA-AGTTCGCAGAAAAGCGAATGCGAGTGGAAAATG 1266
Query 1231 GCTGAAGACTCGATCAAGAAACCTCTATCCAACAACACGGTGAAGCAGAGCTGGATTGTT 1290
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1267 GCTGAAGACTCGATCAAGATACCTCCATCCACCAACACGGTGAAGCAGAGCTGGATTGTT 1326
Query 1291 TTGGAGAAGAGGAGTCAAAGGAATGCACAGTGGAACTATCTCAAGAACATGATCATTGGT 1350
|||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1327 TTGGAGAA------T----G-----CACAGTGGAACTATCTCAAGAACATGATCATTGGT 1371
Query 1351 GTCTTGTTGTTCATCTCCATCATTGGTTCGATCATTCTGGTTGGTTAA 1398
|||||||||||||||||| ||||| ||| ||||||||| |||||||||
Sbjct 1372 GTCTTGTTGTTCATCTCCGTCATTAGTTGGATCATTCTTGTTGGTTAA 1419
Score = 630 bits (341), Expect = 9e-180
Identities = 551/648 (85%), Gaps = 32/648 (5%)
Strand=Plus/Plus
Query 1 ATGGAGGAT-TTGGTGGGATATGGATTCCGTCCG-ACGGATGATGAGCTCGTAGGTTACT 58
||||||||| | |||| | ||| ||||||||| || || || |||||||| ||| |||
Sbjct 130 ATGGAGGATCAAGTTGGG-TTTGGGTTCCGTCCGAAC-GACGAGGAGCTCGTTGGTCACT 187
Query 59 ATCTCCATAACAAAATTCTG--GGAAAGAATTG--GCTA-GTAGAAGGAGCCATTAACGA 113
|||||| |||||||| || | ||||| | | | || | || |||| |||||| | |||
Sbjct 188 ATCTCCGTAACAAAA-TC-GAAGGAAACACTAGCCGCGACGTTGAAGTAGCCATCAGCGA 245
Query 114 GGTCAACATCTGTAGCTTCGATCCATGGAACTTGCGCTTCCAATCTAAGATA-AAATCGA 172
||||||||||||||||| |||||| ||||||||||||||||| || ||| || |||||||
Sbjct 246 GGTCAACATCTGTAGCTACGATCCTTGGAACTTGCGCTTCCAGTCAAAG-TACAAATCGA 304
Query 173 GAGATCCTATGTGGTATTTCTTCTCTCGAAGAGAAAACAAGTACACCAATGGGAATCGAC 232
||||| |||||||||| ||||||||||| ||||||||| | ||| || ||||||||||
Sbjct 305 GAGATGCTATGTGGTACTTCTTCTCTCGTAGAGAAAAC-A--ACA--AA-GGGAATCGAC 358
Query 233 AGAGCAGGACAACAGATTCTGGCT-TCTGGAAGGTTACTGGAGAGCCTGTGGATGTCAAG 291
||||||||||||| | |||||| | |||||| |||| ||||| |||| || ||||||
Sbjct 359 AGAGCAGGACAACGGTTTCTGG-TAAATGGAAGCTTACCGGAGAATCTGTTGAGGTCAAG 417
Query 292 GATCAGTGGGGAACTTGGT-GT-A--CCACTCCTGGTAAGATTGGTCATAAAAGGGTTTT 347
|| |||||||| | || || || | | || |||||||||||||||||||||||||||
Sbjct 418 GACCAGTGGGG-ATTTTGTAGTGAGGGCTTTCGTGGTAAGATTGGTCATAAAAGGGTTTT 476
Query 348 GGTCTTCCTCAAGGGAAGAAT-CTCTGACAAAACCAAATCTGATTGGGTTATCCACGAGT 406
||| |||||| | ||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 477 GGTGTTCCTCGATGGAAG-ATACCCTGACAAAACCAAATCTGATTGGGTTATCCACGAGT 535
Query 407 TTCACGACGACCTCTTACCAGAACATCAGAGGACCTATGTCATCTGCAGACTTGAATATA 466
| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 536 TCCACTACGACCTCTTACCAGAACATCAGAGGACATATGTCATCTGCAGACTTGAGTACA 595
Query 467 AGGGCAACGA--CAAGAGCATTCTATCTGCCAACGCAACAGATCCCACTCCCACTTTTGT 524
|||| | || | || |||||||||||| | |||| ||||||||||||| |||||||
Sbjct 596 AGGGTGATGATGC-GGA-CATTCTATCTGCTTATGCAATAGATCCCACTCCCGCTTTTGT 653
Query 525 CCCTAATATGACTAGTAGTGCAGGTTCTGTGGTCAACCAATCACGTCAAGGAAATTCAGC 584
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 654 CCCCAATATGACTAGTAGTGCAGGTTCTGTGGTCAACCAATCACGTCAACGAAATTCAGG 713
Query 585 ATCTTACAACACTTATTCTGAATATGATTCAGCAAATCATGGCCAGCA 632
||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 714 ATCTTACAACACTTACTCTGAGTATGATTCAGCAAATCATGGCCAGCA 761
> AT1G01020.1 | Symbols: ARV1 | Arv1-like protein | chr1:5928-8737
REVERSE LENGTH=1623
Length=1623
Score = 152 bits (82), Expect = 8e-36
Identities = 106/117 (91%), Gaps = 4/117 (3%)
Strand=Plus/Minus
Query 1281 CTGGATTGTTTTGGAGAAGAGGAGTCAAAGGAATGCACAGTGGAACTATCTCAAGAACAT 1340
|||||||||||| ||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1393 CTGGATTGTTTTAGAGGAGATGAGTCAAAGGAATTCACAGTGGAACTATCTCAAGAACAT 1334
Query 1341 GATCATTGG-TGTCTTGTTGTTCATCTCCATCATTGGTTCGATCATTCTGGTTGGTT 1396
||||||||| | |||| |||||||||||||||||||| | ||||||||| ||||||
Sbjct 1333 GATCATTGGCT-TCTTATTGTTCATCTCCATCATTGGCTGGATCATTCT--TTGGTT 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5