BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333558
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02250.1 | Symbols: anac005, NAC005 | NAC domain containing ... 603 9e-172
AT1G02230.1 | Symbols: ANAC004, NAC004 | NAC domain containing ... 507 7e-143
AT3G04420.1 | Symbols: anac048, NAC048 | NAC domain containing ... 241 8e-63
AT3G04410.1 | Symbols: | NAC (No Apical Meristem) domain trans... 128 6e-29
> AT1G02250.1 | Symbols: anac005, NAC005 | NAC domain containing
protein 5 | chr1:437951-439559 REVERSE LENGTH=1089
Length=1089
Score = 603 bits (326), Expect = 9e-172
Identities = 486/563 (86%), Gaps = 11/563 (2%)
Strand=Plus/Plus
Query 1 ATGGTGAATCCGGTGGGTTTCAGATTCCGTCCGACCGACGAGGAGATAGTCGACCA-TTA 59
|||| ||||||||||||||| |||||||||||||| |||| |||||| ||||| || |||
Sbjct 1 ATGGCGAATCCGGTGGGTTTTAGATTCCGTCCGACTGACGGGGAGATCGTCGA-CATTTA 59
Query 60 CCTCCGGGTGAAAAATCTTGAAAGTGACACGAGCCATGTCGATGAAGTCATTAGCACAGT 119
|||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 60 CCTCCGACCGAAAAATCTCGAAAGTAACACGAGCCATGTCGATGAAGTCATTAGCACAGT 119
Query 120 CGATATCTGTAGCTTAGAACCTTGGAATTTACCTTCCCAGTCTATGATCAAATCGAGTGA 179
||||| |||||||| || |||||| | ||||||||||| |||| ||| ||| | || ||
Sbjct 120 TGATATTTGTAGCTTCGACCCTTGGGACTTACCTTCCCATTCTAGGATGAAAACAAGAGA 179
Query 180 TGC-GGTTTGGCATTTCTTTGGTCGTAAGGAGAATAAATATAACAGAGGTGATCGACAGA 238
| | ||||||| ||||||| || ||||||||||| |||||| | ||||||||||||||
Sbjct 180 T-CAGGTTTGGTATTTCTTCGGCCGTAAGGAGAACAAATATGGTAAAGGTGATCGACAGA 238
Query 239 TGAGAAAAACCAAGTCTGGTTTTTGGAAGAAAACTGGAGTTACCATAAATATCATGCGCA 298
| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||
Sbjct 239 TAAGAAAAACCAAGTCTGGTTTTTGGAAGAAAACTGGCGTTACCATGGATATAATGCGCA 298
Query 299 AAAGGGGAAATCGCGAAAAGATCGGTGAGAAAAAGGTTTTGATGTTTTACTTTAACAAGA 358
||| |||| |||| || |||||||||||||||| ||||||| ||||| | | || |
Sbjct 299 AAACGGGAGATCGTGAGAAGATCGGTGAGAAAAGGGTTTTGGTGTTTAAGAATCACG-GT 357
Query 359 G-TCTC-AAGTCCGATTGGGTTATGCATGAGTATCACGCTACGTTCTCGTCTCCTAATCT 416
| | || ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGT-TCCAAGTCCGATTGGGCTATGCATGAGTATCACGCTACGTTCTCGTCTCCTAATCA 416
Query 417 GAT---GACATATACACTCTGCAAAGTCAAGTTTAAGGGTGAAAGCAGAGAGGGTTCTGT 473
||| |||||| |||||||||||||| ||||||||||||||||| ||||| ||| ||
Sbjct 417 GATAATGACATACACACTCTGCAAAGTTAAGTTTAAGGGTGAAAGGAGAGAATTTTCAGT 476
Query 474 TTCTTCTGGTAGTGGAATTGAGCTTACTCACTCTTTGATCCCTCATACCAACGATTTTGG 533
| || |||||||||||||| ||| |||||||||||| ||||||| ||||||| ||| |||
Sbjct 477 TGCTACTGGTAGTGGAATTAAGCATACTCACTCTTTAATCCCTCCTACCAACAATTCTGG 536
Query 534 AGTTTTTAGTGTAGAGACAGAGG 556
|||||| ||||||||||||||||
Sbjct 537 AGTTTTGAGTGTAGAGACAGAGG 559
> AT1G02230.1 | Symbols: ANAC004, NAC004 | NAC domain containing
protein 4 | chr1:435174-436776 REVERSE LENGTH=1081
Length=1081
Score = 507 bits (274), Expect = 7e-143
Identities = 449/531 (85%), Gaps = 22/531 (4%)
Strand=Plus/Plus
Query 1 ATGGTGAATCCGGTGGGTTTCAGATTCCGTCCGACCGACGAGGAGATAGTCGACCATTAC 60
||| |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct 2 ATGATGAATCCGGTGGGTTTCAGATTCCGTCCAAACGACGAGGAGATCGTCGACCATTAC 61
Query 61 CTCCGGGTGAAAAATCTTGAAAGTGACACGAGCCATGTCGATGAAGTCATTAGCACAGTC 120
|||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 62 CTCCGGCCAAAAAATCTCGATAGTGACACTAGCCATGTCGATGAAGTCATTAGCACAGTC 121
Query 121 GATATCTGTAGCTTAGAACCTTGGAATTTACCTTCCCAGTCTATGATCAAATCGAGTGAT 180
|||||||||||||| || |||||| ||||||||||| |||| |||||||||||||| |||
Sbjct 122 GATATCTGTAGCTTCGAGCCTTGGGATTTACCTTCCAAGTCGATGATCAAATCGAGAGAT 181
Query 181 GCGGTTTGGCATTTCTTTGGTCGT-AAGGAGAATAAA-TATAACAGAGGTGATCGACAGA 238
| ||||||| |||||||| || || ||||||| | || |||||||||||||||| |||||
Sbjct 182 GGGGTTTGGTATTTCTTTAGT-GTTAAGGAGA-TGAAGTATAACAGAGGTGATCAACAGA 239
Query 239 TGA-GAAAAACCAAGTCTGGTTTTTGGAAGAAAACTGGAGTTACCATAAATATCATGCGC 297
|| ||| ||| || ||||| |||||||||||||||||| || || | | ||||||||
Sbjct 240 -GAAGAAGAACAAACTCTGGGTTTTGGAAGAAAACTGGAAAAACAATGACTGTCATGCGC 298
Query 298 AAAAGGGGAAATCGCGAAAAGATCGGTGAGAAAAAGGTTTTGATGTTTTACTTTAA-CAA 356
||||| |||||||| || |||||||||||||||| ||||||| | ||||| || | |
Sbjct 299 AAAAGAGGAAATCGTGAGAAGATCGGTGAGAAAAGGGTTTTGGT-TTTTAAG--AATCGA 355
Query 357 GA-G-TCTCAA-GTCCGATTGGGTTATGCATGAGTATCACGCTACGTTCTCGTCTCCTAA 413
|| | | |||| | |||| ||||||||||| |||||||||||||||| || || ||||||
Sbjct 356 GATGGT-TCAAAGACCGACTGGGTTATGCACGAGTATCACGCTACGTCCTTGTTTCCTAA 414
Query 414 TC---TGATGACATATACACTCTGCAAAGTCAAGTTTAAGGGTGAA-AG-CAGAGAGGG- 467
|| ||||||| |||||| |||||||||| |||||||||||||| || ||||||
Sbjct 415 TCAGATGATGACGTATACAGTCTGCAAAGTTGAGTTTAAGGGTGAAGAGACAGAGATCTC 474
Query 468 TTCTGT-TTCTTCTGGTAGTGGAATTGAGCTTACTCACTCTTTGATCCCTC 517
|||| | |||| ||||||||| |||||| | | ||||||||| |||||||
Sbjct 475 TTCT-TCTTCTACTGGTAGTGAAATTGAACAGATTCACTCTTTAATCCCTC 524
> AT3G04420.1 | Symbols: anac048, NAC048 | NAC domain containing
protein 48 | chr3:1172746-1174467 FORWARD LENGTH=1295
Length=1295
Score = 241 bits (130), Expect = 8e-63
Identities = 386/503 (77%), Gaps = 44/503 (9%)
Strand=Plus/Plus
Query 1 ATGGTGAATCCGGTGGGTTTCAGATTCCGTCCGACCGACGAGGAGATAGTCGACCATTAC 60
|||| ||||||||||||||| |||||||||||||||||| ||||||| |||| | |||||
Sbjct 95 ATGGAGAATCCGGTGGGTTTAAGATTCCGTCCGACCGACAAGGAGATCGTCGTCGATTAC 154
Query 61 CTCCGGGTGAAAAATCT-TGAAAGTGACACGAGCCATGTCGAT-GAAGTCATTAGCACAG 118
|||| | ||||| || || || |||||||| ||||| ||| | ||||||||||||||
Sbjct 155 CTCC-GACCAAAAAACTCCGATAGGGACACGAGTCATGTTGATCG-AGTCATTAGCACAG 212
Query 119 TCGA-TATCTGTAGCTTAGAACCTTGGAATTTACCTTCCCAGTCTATGATCAAATC-GAG 176
|| | |||| ||||||| || |||||| | ||||||| |||||||| ||||||| | ||
Sbjct 213 TC-ACTATCCGTAGCTTCGACCCTTGGGAGTTACCTTGCCAGTCTAGGATCAAA-CTGAA 270
Query 177 TGATGCGGT-TTGGCATTTCTTTGGTCGTAAGGAGAATAAATATAACAGAGGTGATCGAC 235
|||| || |||| |||||| | | ||||||||| |||||| ||||||||||| ||
Sbjct 271 AGATG-AGTCTTGGTGTTTCTTCAGCCCTAAGGAGAACAAATATGGCAGAGGTGATCAAC 329
Query 236 AGATGAGAAAAACCAAGTCTGGTTTTTGGAAGAAAACTGGAGTTACCATAA--ATATCAT 293
| || |||||||| || ||||||| ||||||| ||||| |||| || |||| |
Sbjct 330 AAATTAGAAAAACGAAATCTGGTTACTGGAAGATTACTGG-CAAACCA-AAGCCTATC-T 386
Query 294 GCGCAAAAGGGGAAATCGCGAAAAGATCGGTGAGAAAAAGGTTTTGATGTTTTACTTTAA 353
|| | || ||| || |||||||||||||||||||||||||||||||| | |
Sbjct 387 -TGC-------GTAACCGCCAAGAGATCGGTGAGAAAAAGGTTTTGATGTTTTACATGAG 438
Query 354 CAAG-A----G-TC--TC-AAGTCCGATTGGGTTATGCATGAGTATCACGCTACGTTCTC 404
||| | | | || || ||||| ||||||||||| ||||| || ||| |||||
Sbjct 439 TAAGGAACTTGGTGGATCCAAATCCGACTGGGTTATGCACGAGTACCATGCT---TTCTC 495
Query 405 GTC-TCCT-A-ATC-TGATGACATATACACTCTGCAAAGTCAAGTTTAAGGGTGAAA-GC 459
|| | || | || |||||||||||||| | || ||||| | |||||||||||| |
Sbjct 496 -TCCTACTCAGATGATGATGACATATACAATATGTAAAGTTATGTTTAAGGGTGACGTG- 553
Query 460 AGAGAGGGTTCTGT-TTCTTCTG 481
|||||| |||| | ||||||||
Sbjct 554 AGAGAGATTTCT-TCTTCTTCTG 575
> AT3G04410.1 | Symbols: | NAC (No Apical Meristem) domain transcriptional
regulator superfamily protein | chr3:1168837-1169205
FORWARD LENGTH=231
Length=231
Score = 128 bits (69), Expect = 6e-29
Identities = 93/104 (89%), Gaps = 4/104 (4%)
Strand=Plus/Plus
Query 1 ATGGTGAATCCGGTGGGTTTCAGATTCCGTCCGACCGACGAGGAGATAGTCGACCATTAC 60
|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 1 ATGGTGAATCCGGTGGGTTTCAGATTCCGTCCGACCAAAGAGGAGATCGTCGACCATTAC 60
Query 61 CTCCGGGTGAA-AAATCTT-GAAAGTGACACGAGCCATGTCGAT 102
|||||| || |||| || || ||||||||||||||||||||
Sbjct 61 CTCCGGCC-AACAAAT-TTCGATGGTGACACGAGCCATGTCGAT 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31446576022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5