BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333565
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | basic helix-loo... 749 0.0
> AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein | chr1:465718-467844
REVERSE LENGTH=1253
Length=1253
Score = 749 bits (405), Expect = 0.0
Identities = 732/880 (83%), Gaps = 62/880 (7%)
Strand=Plus/Plus
Query 1 ATGGAACTAGGATGGAGAAACGACGTCGGATCATTTGCTGTGAAAGATCATGACGT-A-G 58
|||||| | |||||||||||||||||||||||| |||||||||||||||| | | | | |
Sbjct 181 ATGGAATTGGGATGGAGAAACGACGTCGGATCACTTGCTGTGAAAGATCAGGGCATGATG 240
Query 59 -GAGAAATG-GCAAGAAGTGATGAAGATCGTCTAATTC-ACGGCT-TAAAATGGAGCTAC 114
||||| | ||||||||||||||||||||||||| || |||| | |||||||| |||||
Sbjct 241 TCAGAAA-GAGCAAGAAGTGATGAAGATCGTCTAA-TCAACGG-TCTAAAATGGGGCTAC 297
Query 115 GACAACTACTTTGATCATGATCAAACAGATAATCATCTCCAAATTGTTCCAGAGATCCAG 174
| ||||||||||||||||||||| |||||| |||| || |||||||||||||| ||
Sbjct 298 G---GCTACTTTGATCATGATCAAACTGATAATTATCTTCAGATTGTTCCAGAGATTCAT 354
Query 175 AAAGTAGAAGAAGAAGTACCTAA-GACAGATTTGTTGGTTGCTGTCCCTGATGAACATTC 233
|||| || |||| || | | || || ||||| ||||||| ||||||||||||||||||
Sbjct 355 AAAGAAGTAGAA-AA-T-GCGAAGGA-GGATTTATTGGTTGTTGTCCCTGATGAACATTC 410
Query 234 TGAAACTGGTGATCATCAT--GA-T---CATATTTCAGATA-ATC-G---AT--ATTAT- 279
|||||||| |||||||||| | | || ||||||| | ||| | || ||| |
Sbjct 411 TGAAACTGATGATCATCATCATATTAAAGATTTTTCAGAGAGATCAGATCATCGATTTTA 470
Query 280 TC-GAGAAACAAACATGAGAA-ACCAAAGCGGCGTCGTAGCCAGGTCTT---CAGTGATG 334
|| |||||||||||||||||| ||||| ||||||| ||||||||| |||||||
Sbjct 471 TCTGAGAAACAAACATGAGAACCCCAAA-AAACGTCGTATCCAGGTCTTAAGTAGTGATG 529
Query 335 AGGAATCAGATGG-GTTTACTAGAGAAGTTCCTTCAGTGACACGAAAAGGTTCCAAGAGA 393
| ||||| || || |||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 530 ATGAATCGGA-GGAGTTTACAAGAGAAGTTCCTTCAGTTACTCGAAAAGGTTCCAAGAGA 588
Query 394 AGAAG-A-AG-CGAGGAGATGTGTAATAAGATGCGTACGCTACAGCAACTTGTACCTGAT 450
||||| | || |||| ||||| ||||||||||||||| |||||||||||| |||||| ||
Sbjct 589 AGAAGAAGAGACGAGAAGATGAGTAATAAGATGCGTAAGCTACAGCAACTCGTACCTAAT 648
Query 451 TGTCACAAGACGGACAAGGTTTCAGTTCTCGATGATG-CCATTGAGTATATGAAAAGTCT 509
||||||||||||||||||||||| |||||||| | | |||| ||||||||||||| ||
Sbjct 649 TGTCACAAGACGGACAAGGTTTCGGTTCTCGA-CAAGACCATAGAGTATATGAAAAACCT 707
Query 510 TCAGCTTCAA-TTCAAGGTGATGTCAATGA-TGGGGATGAATCCTTATTTTCCTCCGGCT 567
||| |||||| ||| || ||||||||| | ||||| ||||||||||||||| ||||||
Sbjct 708 TCAACTTCAACTTC-AGATGATGTCAA-CAGTGGGGGTGAATCCTTATTTTCTTCCGGCG 765
Query 568 ATATTA-GACTATGGAATAATGAACAACCACCA-GTTGACTGCGATGGCTGT-GG--CAC 622
| |||| || | ||| |||| ||||||| || | |||| || |||||| | || |||
Sbjct 766 ACATTAGGA-TTTGG---AATGCACAACCA-CATGCTGACGGCAATGGCT-TCGGCTCAC 819
Query 623 GG-CAAAATGTGGCGAATCAAATGATGTCGTCACAGTTGATTCCGGCGTCAAATTGGCCA 681
|| | |||| ||||||||| |||||| | || | | | |||||||||| ||||||||||
Sbjct 820 GGCCTAAATCCGGCGAATCACATGATGCCATCGCCGCTAATTCCGGCGTTAAATTGGCCA 879
Query 682 TTACCACCGTTTACTAATTTTTCATTCCCACACTCACCTAATCAACCTCTCTTTCTTACA 741
|||||||||||||||||| ||||||||||||| ||| ||| |||| |||| |||||||||
Sbjct 880 TTACCACCGTTTACTAATATTTCATTCCCACATTCATCTAGTCAATCTCTATTTCTTACA 939
Query 742 ACAACACCACCAGCTTCTTCTCCTCAATGC-CTTCACGGTTTGGTTCCTTGTTTTCCAAG 800
||| || ||||||||||||||||||| | | ||||||||||||||||||| ||| |||||
Sbjct 940 ACATCATCACCAGCTTCTTCTCCTCAGT-CTCTTCACGGTTTGGTTCCTTATTTCCCAAG 998
Query 801 TTTCCTAGATTTTTCTTCCCATGCGATGAGAAGACTATGA 840
|||| | |||||||||||||||||||||||||||||||||
Sbjct 999 TTTCTTGGATTTTTCTTCCCATGCGATGAGAAGACTATGA 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5