BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333621
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02940.1 | Symbols: ATGSTF5, GSTF5 | glutathione S-transfera... 1074 0.0
> AT1G02940.1 | Symbols: ATGSTF5, GSTF5 | glutathione S-transferase
(class phi) 5 | chr1:663079-664128 REVERSE LENGTH=771
Length=771
Score = 1074 bits (581), Expect = 0.0
Identities = 651/685 (95%), Gaps = 4/685 (1%)
Strand=Plus/Plus
Query 65 GTCAAGAATTAGCTCACAAAGATGAGTACAAGATTTATGGGTACCCTTACTCCACCAACA 124
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 89 GTCAAGAATTAGCTCGTAAAGATGAGTACAAGATTTATGGGTACCCTTACTCAACCAACA 148
Query 125 CAAGGCGTGTCCTCGCCGTTCTCCATGAGAAAGGTCTCTCTTACGATCCCATCACCGTCG 184
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 149 CAAGGCGTGTCCTCGCCGTTCTTCATGAGAAAGGTCTCTCTTACGATCCCATCACCGTCA 208
Query 185 ACTTGAAAGCCGGTGACCAGAAGAAGCC-ACGTTTTCTCTCTATCAATCCATTTGGTCAA 243
|||||| ||||||||||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 209 ACTTGATAGCCGGTGACCAGAAGAAGCCGA-GTTTTCTCGCTATCAATCCATTTGGTCAA 267
Query 244 GTCCCAGTGTTCCTAGATGGGGATCTTAAGTTGACTGAATCTCGAGCTATATCTGAATAC 303
|||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 268 GTCCCAGTTTTCCTAGACGGGGGTCTTAAGTTGACTGAATCTCGAGCTATATCTGAATAC 327
Query 304 ATTGTGACTGTCCATAAATCAAGAGGCACACAACTTCTGAATTACGAAAGCTACaaaaaa 363
|| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 328 ATAGCGACTGTCCATAAATCAAGAGGCACACAACTTCTGAATTACAAAAGCTACAAAACA 387
Query 364 aTGGGAACACAAAGAATGTGGATGGCTATTGAATCTTTTGAGTTTGATCCACTCACATCA 423
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 388 ATGGGAACACAAAGAATGTGGATGGCTATCGAATCTTTTGAGTTTGATCCACTCACATCA 447
Query 424 ATATTGACCCTGG-AGCAATCCATCAAGCCTATGTACGGTCTAAAGACGGACTACAAGGT 482
| | ||||| ||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 448 ACACTGACC-TGGGAACAATCCATCAAGCCTATGTACGGTCTAAAGACGGACTATAAGGT 506
Query 483 TGTGAATGAAACAGAGGCAAAGTTAGAGAAGGTTCTAGATATATACGAAGAACGACTCAA 542
|||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 507 TGTGAATGAAACCGAGGCGAAGCTAGAGAAGGTTCTAGATATATACGAAGAACGACTCAA 566
Query 543 AAAGTCTAGCTTCTTGGCTAGTAACAGTTTCACAATGGCTGATCTTTATCACCTTCCGAA 602
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 567 AAATTCTAGCTTCTTGGCTAGTAACAGCTTCACAATGGCTGATCTTTATCACCTTCCTAA 626
Query 603 TATTCAATACCTTATGGACACACATACAAAGAGATTGTTTGAAAACCGGCCAAGCGTGCG 662
||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 627 TATACAATACCTTATGGACACACATACAAAGAGAATGTTTGTAAACCGGCCAAGCGTGCG 686
Query 663 CCGGTGGGTGGCTGAGATCATAGCTAGACCGGCTTGGAAGAGGGCATGTGATGTTAAGGC 722
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 687 CCGGTGGGTGGCTGAGATCACAGCTAGACCGGCTTGGAAGAGGGCATGTGATGTGAAGGC 746
Query 723 TTGGTACCATAAGAAGAAGAATTAA 747
|||||||||||||||||||||||||
Sbjct 747 TTGGTACCATAAGAAGAAGAATTAA 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5