BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333714
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03910.2 | Symbols: | EXPRESSED IN: 24 plant structures; EX... 2084 0.0
> AT1G03910.2 | Symbols: | EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134),
Cactin, central region (InterPro:IPR018816);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G36815.2). | chr1:996115-1000437 FORWARD LENGTH=2466
Length=2466
Score = 2084 bits (1128), Expect = 0.0
Identities = 1209/1249 (97%), Gaps = 2/1249 (0%)
Strand=Plus/Plus
Query 769 GGACTCACTGTTAAAGATATGGAAGAGCTTCGCGATGATATCAAGATGTATCTGGATTTG 828
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GGACTTACTGTTAAAGATATGGAAGAGCTTCGCGATGATATCAAGATGTATCTGGATTTG 1072
Query 829 GATCGGGCAACTCCAACACGCGTACAATATTGGGAGGCGCTTATTGTGGTATGCGATTGG 888
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GATCGGGCAACTCCAACACGTGTACAATATTGGGAGGCGCTTATTGTGGTATGCGATTGG 1132
Query 889 GAGTTAGCTGAAGCTCGTAAAAGGGATGCCCTTGATCGAGCTAGAGTTAGAGGGGAGGAA 948
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1133 GAGTTAGCTGAAGCTCGTAAGAGGGATGCCCTTGATCGAGCTAGAGTTAGAGGGGAGGAG 1192
Query 949 CCTCCTGCAGAATTGCTTGCTCAAGAGAGGGGATTACACGCTGGTGTTGAAGCTGATGTG 1008
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1193 CCTCCTGCAGAATTGCTTGCTCAAGAGAGGGGACTACACGCTGGTGTTGAAGCTGATGTG 1252
Query 1009 AGAAAACTTCTTGATGGGAAGACCCACGCGGAGCTTGTAGAACTGCAGTTGGACATCGAA 1068
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 AGAAAACTTCTCGATGGGAAGACCCACGCGGAGCTTGTAGAACTGCAGTTGGACATCGAA 1312
Query 1069 TCGCAGCTGCGTTCTGGGTCAGCAAAAGTGGTAGAGTATTGGGAAGCAGTTCTTAAACGC 1128
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 1313 TCGCAGCTGCGTTCTGGGTCTGCGAAAGTAGTAGAGTATTGGGAAGCAGTTCTTAAACGC 1372
Query 1129 CTCGAAATATACAAGGCGAAGGCTTGCTTGAAGGAAATACACGCTGAGATGCTGAGGA-G 1187
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 1373 CTCGAAATATACAAGGCAAAGGCTTGCTTGAAGGAAATACACGCTGAGATGCTGA-GACG 1431
Query 1188 TCATCTACATCGCCTCGAGCAACTTTCAGAGGGTGAAGAAGATTTAGAAGTTAATCATGG 1247
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 1432 TCATCTACATCGCCTCGAGCAACTTTCAGAGGGTGAAGATGATGTAGAAGTTAATCCTGG 1491
Query 1248 CTTAACACGTGTGGTGGAAGAAAATGAGGAGGAGATAAATGGTATGAATCATTCAGATGC 1307
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1492 CTTAACACGTGTGGTGGAAGAAAATGAGGAGGAGATAAATGATACGAATCTTTCAGATGC 1551
Query 1308 TGAAGAAGCATTTTCTCCAGAGCCTATTGCAGAGGAAGAAGAAGCTGATGAGGCAGCAGA 1367
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1552 TGAAGAAGCATTTTCTCCAGAGCCTGTTGCGGAGGAAGAAGAAGCTGATGAGGCAGCAGA 1611
Query 1368 AGCGGCTGGTTCGTTTTCGCCAGAGCTCATGCACGGTGATGATCGTGAAGCAGCAATCGA 1427
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1612 AGCGGCTGGTTCGTTTTCGCCAGAGCTCATGCACGGTGATGATCGTGAAGAAGCAATCGA 1671
Query 1428 TCCCGAGGAAGACAAGAAGCTACTGGAAATGAAACGGATGGTTGTGTTGGAGAAACAGAA 1487
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 1672 TCCCGAGGAAGACAAGAAGCTACTGCAAATGAAACGGATGATTGTGCTGGAGAAACAGAA 1731
Query 1488 GAAACGGCTTAAAGAAGCTATGGACTCAAAACCAGCACCTGTAGAAGATAACTTGGAGCT 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 GAAACGGCTTAAAGAAGCTATGGACTCAAAACCAGCACCTGTAGAAGATAACTTGGAGCT 1791
Query 1548 TAAAGCAATGAAAGCAATGGGAGCAATGGAGGAAGGTGATGCCATATTTGGCTCTAATGC 1607
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1792 TAAAGCAATGAAAGCAATGGGAGCAATGGAAGAAGGTGATGCCATATTTGGCTCTAATGC 1851
Query 1608 TGAAGTGAACCTCGATTCTGAGGTATACTGGTGGCATGACAAGTACCGGCCAAGAAAACC 1667
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 TGAAGTGAACCTCGATTCCGAGGTATACTGGTGGCATGACAAGTACCGGCCAAGAAAACC 1911
Query 1668 AAAGTATTTCAATCGGGTTCACACGGGTTACGAATGGAATAAGTATAACCAAACTCACTA 1727
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1912 GAAGTATTTCAATCGGGTTCACACAGGTTACGAATGGAATAAGTATAACCAAACTCACTA 1971
Query 1728 TGACCACGATAACCCGCCTCCAAAAATCGTTCAAGGGTACAAGTTTAACATCTTCTACCC 1787
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1972 TGACCACGATAATCCGCCTCCAAAAATCGTTCAAGGATACAAGTTTAACATCTTCTACCC 2031
Query 1788 GGATTTAGTAGACAAGATTAAGGCTCCCATTTACACTATCGAAAAAGATGGTACAAGCGC 1847
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2032 GGATTTAGTAGACAAAATTAAGGCTCCCATTTACACTATCGAAAAAGATGGGACAAGTGC 2091
Query 1848 TGAAACTTGTATGATCCGGTTCCATGCTGGTCCGCCTTATGAAGACATTGCGTTCCGGAT 1907
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2092 TGAAACGTGTATGATCCGGTTCCATGCTGGTCCACCTTATGAAGACATTGCGTTCCGGAT 2151
Query 1908 TGTGAATAAAGAATGGGAATATTCTCATAAGAAAGGTTTCAAATGCACGTTTGAGCGGGG 1967
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 2152 TGTGAATAAAGAATGGGAGTATTCTCACAAGAAAGGTTTCAAATGCACGTTTGAGCGTGG 2211
Query 1968 GATTCTACACTTGTACTTCAACTTTAAACGACATAGGTACAGGCGATAA 2016
|||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 2212 GATTCTGCATTTGTACTTCAACTTTAAACGACATAGGTACAGGCGATAA 2260
Score = 1171 bits (634), Expect = 0.0
Identities = 730/775 (94%), Gaps = 11/775 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTCATGGTAAGAGTAAGAGAGGTAGAGGTGGGAGTCAGAAGAAGCGGAGAGAT 60
|||| ||||||||||||| ||||||||| |||| |||| || ||||||||||||||||||
Sbjct 110 ATGGGTTCTCATGGTAAGGGTAAGAGAGATAGAAGTGGAAGGCAGAAGAAGCGGAGAGAT 169
Query 61 GAATCCGA------GTCTGAGTCCGAGTCTTACACTTCTGACTCGGATGGCTCTGATGAT 114
|||||||| |||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 170 GAATCCGAGTCTGGGTCTGAGTCCGAGTCTTACACTTCTGACTCTGATGGCTCAGATGAT 229
Query 115 TTCTCGCCGCCCAGGAGTTCCAGGAGGAAGAAAGGCACCACCAGCAGTCGTCGGACTCGA 174
|| |||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 230 TTGTCGCCGCCCAGGAGTTCCAGGAGGAAGAAAGG---TAGCAGCAGTCGTCGGACTCGA 286
Query 175 CGCCATAGCTCAAGTGATGATTCCAGTGACAGCGATGGTGGACGCAAGAGTAAGAAGAGA 234
|||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 287 CGCCGTAGCTCAAGTGATGATTCCAGTGACAGTGATGGTGGACGGAAGAGTAAGAAGAGA 346
Query 235 TCTTCATCTAAGGATGT-CTCAGAGGAAAAACTCAAGGAATATATGTCTAAAAAAGCTCA 293
||||||||||||||| | ||| ||||||||| | | ||| ||||||||||||||||||||
Sbjct 347 TCTTCATCTAAGGAT-TACTCGGAGGAAAAAGTTACGGAGTATATGTCTAAAAAAGCTCA 405
Query 294 GAAGAAGGCATTACGTGCAGCAAAGAAACTGAAGACGCAGTCAGTGTCAGGCTACTCCAA 353
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 406 GAAGAAGGCATTACGTGCAGCAAAGAAACTGAAGACGCAGTCAGTGTCAGGGTACTCCAA 465
Query 354 CGATTCAAACCCATTTGGGGATTCGAATCTCACTGAGACATTTGTGTGGCGGAAGAAGAT 413
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 466 TGATTCAAACCCATTTGGTGATTCAAATCTCACTGAGACATTTGTGTGGCGGAAGAAGAT 525
Query 414 TGAAAAAGATGTTCACCGTGGAGTACCGCTGGAAGAATTTTCCGTTAAAGCTgagaagag 473
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TGAAAAAGATGTTCATCGAGGAGTACCGCTGGAAGAATTTTCCGTTAAAGCTGAGAAGAG 585
Query 474 aagacacagggaaaggatgacagaggttgaaaaggttaagaagaggagagaagagagagC 533
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 AAGACACCGGGAAAGGATGACAGAGGTTGAAAAGGTTAAGAAGAGGAGAGAAGAGAGAGC 645
Query 534 AGTGGAGAAAGCTCGACATGAGGAAGAAATGGCATTATTAGCTAGAGAACGTGCTCGAGC 593
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 646 AGTGGAGAAAGCTCGACATGAAGAAGAAATGGCATTGTTAGCTAGAGAACGTGCTCGGGC 705
Query 594 TGAGTTCCATGATTGGGAGAAGAAAGAGGAAGAGTTCCATTTCGATCAAAGCAAGGTGAG 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TGAGTTCCATGATTGGGAGAAGAAAGAGGAAGAGTTCCATTTCGATCAAAGCAAGGTGAG 765
Query 654 GTCAGAGATTAGATTACGTGAAGGCCGACTTAAGCCAATCGACGTGCTCTGCAAGCACTT 713
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 766 GTCAGAGATTAGATTACGTGAAGGTCGACTGAAGCCAATCGACGTCCTCTGCAAGCACTT 825
Query 714 GGATGGTTCAGATGATCTGGATATCGAGCTCAGTGAACCCTACATGGTTTTCAAG 768
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 826 GGATGGTTCAGATGATTTGGATATCGAGCTCAGTGAACCGTACATGGTTTTCAAG 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99899084550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5