BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333720
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03980.1 | Symbols: ATPCS2, PCS2 | phytochelatin synthase 2 ... 1094 0.0
AT5G44070.1 | Symbols: CAD1, ARA8, ATPCS1, PCS1 | phytochelatin... 791 0.0
> AT1G03980.1 | Symbols: ATPCS2, PCS2 | phytochelatin synthase
2 | chr1:1018570-1022108 REVERSE LENGTH=2337
Length=2337
Score = 1094 bits (592), Expect = 0.0
Identities = 655/685 (96%), Gaps = 5/685 (1%)
Strand=Plus/Plus
Query 1 ATGTCTATGGCGAGTTTGTATCGGCGATCTCTTACCTCCCCGCCGGCGATAGATTTCGCT 60
|||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||
Sbjct 238 ATGTCTATGGCGAGTTTGTATCGGCGGTCTCTT---TCCCCTCCGGCGATAGATTTCGCT 294
Query 61 TCTGTTGAAGGCAAGCAAATCTTCAATGAAGCGCTTCAGAAAGGCACTATGGAAGGATTT 120
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TCTTTTGAAGGAAAGCAAATCTTCAATGAAGCGCTTCAGAAAGGCACTATGGAAGGATTT 354
Query 121 TTCAGGCTGATTTCTAATTTTCAGACTCAGTCTGAGCCAGCTTTTTGTGGGTTAGCTAGT 180
||| ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 355 TTCGGGCTGATTTCTTATTTTCAGACACAGTCTGAGCCAGCTTTTTGTGGCTTAGCTAGT 414
Query 181 CTTTCTATGGTTTTGAATTCTCTTTCTATTGACCCGGGGAGAAAATGGAAAGGGCCTTGG 240
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 415 CTTTCGATGGTTTTGAATTCTCTTTCTATTGACCCGGGAAGAAAGTGGAAAGGGCCTTGG 474
Query 241 AGGTGGTTTGATGAATCAATGCTGGAATGTTGCGAGCCCCTTGAAATAGTGAAGGATAAA 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 475 AGGTGGTTTGATGAATCAATGCTGGAATGTTGCGAGCCGCTTGAAATAGTGAAGGATAAA 534
Query 301 GGCATTTCGTTTGGTAAAGTTGTCTGTTTGGCTCATTCTTCAGGAGCAAAAGTCGAAGCT 360
|||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 535 GGCATTTCATTTGGAAAAGTGGTCTGTTTAGCTCATTCTTCAGGAGCAAAAGTCGAAGCT 594
Query 361 TTCCGCACAAACCAGAGCACCATTGATGATTTCCGCAAATACGTGGTCAAATGTTCCACT 420
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 595 TTCCGCACAAATCAGAGCACCATTGATGATTTCCGCAAATATGTGGTCAAATGTTCAACT 654
Query 421 TCTGATAATTGTCATATGATCTCAACATATCATAGAG-AAGTACTCAAGCAGACTGGAAC 479
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 655 TCTGATAATTGTCATATGATCTCAACATATCATAG-GCAAGTACTCAAGCAGACTGGAAC 713
Query 480 AGGCCATTTTTCACCTATTGGTGGTTATAATGCTGAAAGAGATATGGCTTTGATTCTTGA 539
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGGCCACTTTTCACCTATTGGTGGTTATAATGCTGAAAGAGATATGGCTTTGATTCTTGA 773
Query 540 TGTCGCTCGTTTCAAGTATCCTCCTCACTGGGTTCCACTTAAACTTCTTTGGGATGCCAT 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 774 TGTCGCTCGTTTCAAGTATCCTCCTCACTGGGTTCCTCTTAAACTTCTTTGGGATGCCAT 833
Query 600 GGACAGTATTGATCAGTCGACAGGGAGACGTAGAGGGTTCATGCTTATATCCAGACCCCA 659
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 834 GGATAGTATTGATCAGTCAACAGGGAGACGTAGAGGGTTCATGCTTATATCAAGACCCCA 893
Query 660 CAGAGAACCAGGATTGCTCTATACA 684
|||||||||||||||||||||||||
Sbjct 894 CAGAGAACCAGGATTGCTCTATACA 918
Score = 900 bits (487), Expect = 0.0
Identities = 538/562 (96%), Gaps = 5/562 (1%)
Strand=Plus/Plus
Query 688 TCACTTCCAGCAAATTTCAACCAATTTATCAAATGGATGGCTGAGATTCGAAGAATAGAG 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1039 TCACTTCCAGCAAATTTCAACCAATTTATCAAATGGATGGCTGAGATTCGAAGAACAGAG 1098
Query 748 GATGTAAATCAAAATCTTAGCTCAGAAGAGAAATCAAGGCTCGACTCAAAGCAAGAGTTA 807
|||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 1099 GATGTAAATCAAAATCTTAGCTCAGAAGAGAAATCAAGGCTCAAATTAAAGCAAGAGTTA 1158
Query 808 CTGAAACAAGTGCAAGAAACTAAACTGTTCAAGCACGTAGATAAGTTTCTATCCTCTGTG 867
||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 1159 CTGAAACAAGTGCAAGAAACTAAACTGTTCAAGCATGTGGATAAGTTTCTCTCCTCTGT- 1217
Query 868 GGTTACGAAGACAATCTGCCATATGTTGCTGCTAAGGTTTATTGCGAAGGAGATGAAATC 927
| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1218 -G-TACGAAGACAATCTGCCATATGTTGCTGCTAAGGTTTATTGTGACGGAGATGAAATC 1275
Query 928 TTATCGGGATATGAATCAGATGAGTCTTGTTGTGAGGAAACTTGTGTCAAATGTATCAAA 987
||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 1276 TTATCGGGATATGAATCAGATGAATCCTGTTGTAAGGAAACTTGTGTCAAATGTATCAAA 1335
Query 988 GGTCTTGCTGAGGAGAAAGTGACAGTGGTAGCTTACCCATCCGAGAACGATGTATTCACT 1047
||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1336 GGTCTTGGTGAGGAGAAAGTGACAGTGGTAGCTTACCCATCCGGGAACGATGTGTTCACT 1395
Query 1048 GCTCTTCTGTTGGCTTTACCTCCACAAACTTGGTCAGGTATCAAAGACCAGTCACTTTTG 1107
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1396 GCTCTTCTGTTGGCTTTACCTCCACAGACGTGGTCAGGTATCAAAGACCAGTCACTTTTG 1455
Query 1108 CAAGAAATGAAACAGCTCATTTCCATGGTTAGCCTTCCGACTTTGCTTCAACAAGAGGTT 1167
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1456 CAAGAAATGAAACAGCTCATTTCCATGGTTAGCCACCCGACTTTGCTTCAACAAGAGGTT 1515
Query 1168 TTGCATCTACGACGCCAACTTGAGATGCTAAAACGATGCCAGGAGAATAAAGAAGACGAA 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 TTGCATCTACGACGCCAACTTGAGATGCTAAAACGATGCCAGGAGAATAAAGAAGACGAA 1575
Query 1228 -ATACTCTCTGCTCCTGCCTAA 1248
| |||||||||||||||||||
Sbjct 1576 GA-ACTCTCTGCTCCTGCCTAA 1596
> AT5G44070.1 | Symbols: CAD1, ARA8, ATPCS1, PCS1 | phytochelatin
synthase 1 (PCS1) | chr5:17734738-17737859 FORWARD LENGTH=1783
Length=1783
Score = 791 bits (428), Expect = 0.0
Identities = 603/688 (88%), Gaps = 10/688 (1%)
Strand=Plus/Plus
Query 1 ATGTCTATGGCGAGTTTGTATCGGCGATCTCTTACC-TCCCCGCCGGCGATAGA-TTTCG 58
||| ||||||||||||| ||||||||||||||| || || || ||||| || || |||
Sbjct 139 ATGGCTATGGCGAGTTTATATCGGCGATCTCTT-CCTTCTCCTCCGGCCATTGACTTT-T 196
Query 59 CTTCTGTTGAAGGCAAGCAAATCTTCAATGAAGCGCTTCAGAAAGGCACTATGGAAGGAT 118
|||| | |||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 197 CTTCCGCCGAAGGCAAGCTAATCTTCAATGAAGCGCTTCAGAAAGGAACTATGGAAGGAT 256
Query 119 TTTTCAGGCTGATTTC-TAATTTTCAGACTCAGTCTGAGCCAGCTTTTTGTGGGTTAGCT 177
|||||||| ||||||| | |||||||||| || || || || || | |||||| || |||
Sbjct 257 TTTTCAGGTTGATTTCGT-ATTTTCAGACACAATCCGAACCTGCGTATTGTGGTTTGGCT 315
Query 178 AGTCTTTCTA-TGGTTTTGAATTCTCTTTCTATTGACCCGGGGA-GAAAATGGAAAGGGC 235
||||| || | |||| |||||| |||||||||| || || ||| | |||||||||||||
Sbjct 316 AGTCTCTC-AGTGGTGTTGAATGCTCTTTCTATCGATCC-TGGACGTAAATGGAAAGGGC 373
Query 236 CTTGGAGGTGGTTTGATGAATCAATGCTGGAATGTTGCGAGCCCCTTGAAATAGTGAAGG 295
|||||||||||||||||||||||||| |||| || ||||| || || ||| |||||||||
Sbjct 374 CTTGGAGGTGGTTTGATGAATCAATGTTGGATTGCTGCGAACCTCTGGAAGTAGTGAAGG 433
Query 296 ATAAAGGCATTTCGTTTGGTAAAGTTGTCTGTTTGGCTCATTCTTCAGGAGCAAAAGTCG 355
| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct 434 AAAAAGGCATTTCATTTGGAAAAGTTGTCTGTTTGGCTCATTGTTCAGGAGCAAAAGTTG 493
Query 356 AAGCTTTCCGCACAAACCAGAGCACCATTGATGATTTCCGCAAATACGTGGTCAAATGTT 415
| |||||||| |||| |||||||||||||||||||||||||||| || ||||||||
Sbjct 494 AGGCTTTCCGTACAAGTCAGAGCACCATTGATGATTTCCGCAAATTTGTCGTCAAATGCA 553
Query 416 CCACTTCTGATAATTGTCATATGATCTCAACATATCATAGAGAAGTACTCAAGCAGACTG 475
| | |||||| |||||||||||||||||||||||||| ||| ||| | ||||||||||
Sbjct 554 CGAGTTCTGAGAATTGTCATATGATCTCAACATATCACCGAGGTGTATTTAAGCAGACTG 613
Query 476 GAACAGGCCATTTTTCACCTATTGGTGGTTATAATGCTGAAAGAGATATGGCTTTGATTC 535
| || || || ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 614 GGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGATATGGCTTTGATTC 673
Query 536 TTGATGTCGCTCGTTTCAAGTATCCTCCTCACTGGGTTCCACTTAAACTTCTTTGGGATG 595
||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 674 TTGATGTTGCTCGTTTCAAGTATCCCCCTCACTGGGTTCCTCTTAAACTTCTTTGGGAAG 733
Query 596 CCATGGACAGTATTGATCAGTCGACAGGGAGACGTAGAGGGTTCATGCTTATATCCAGAC 655
|||||||||||||||||||||| ||||||| |||||||||||||||||| ||||| ||||
Sbjct 734 CCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGGGTTCATGCTCATATCTAGAC 793
Query 656 CCCACAGAGAACCAGGATTGCTCTATAC 683
| ||||||||||| ||||||||||||||
Sbjct 794 CACACAGAGAACCCGGATTGCTCTATAC 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5