BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333726
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT1G04030.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1901 0.0
> AT1G04030.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G44040.1);
Has 1835 Blast hits to 1511 proteins in 238 species: Archae
- 7; Bacteria - 164; Metazoa - 377; Fungi - 135; Plants -
187; Viruses - 22; Other Eukaryotes - 943 (source: NCBI BLink).
| chr1:1040383-1042892 FORWARD LENGTH=1846
Length=1846
Score = 1901 bits (1029), Expect = 0.0
Identities = 1227/1319 (93%), Gaps = 28/1319 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTGCTTTTCGGGTTGCTTCGGTGGTCGGAAGAATCGCCGGCGTCAGAGACGCAAA 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 215 ATGGGTTGCTTTTCGGGTTGCTTCGGTGGACGGAAGAATCGCCGGCGTCAGAGACGCAGA 274
Query 61 GATTCCGATCAAGCTAGAGATAACAAACTCGCTGCGGAATCTGCA-AA----A-C-T-TG 112
||||||||| |||||||||||||||||||| ||| |||| ||||| || | | | ||
Sbjct 275 GATTCCGATGAAGCTAGAGATAACAAACTCTCTGTGGAAACTGCAGAACCTCATCATCTG 334
Query 113 -ATGATAGAGTCCACACTGTTGACGAAATCCCGAAATCTTCTGTGATTCCAATTACCGAG 171
||||||||||||||| |||||| || ||||||||| |||||||||||||||| || ||
Sbjct 335 AATGATAGAGTCCACATTGTTGAGGAGATCCCGAAAGCTTCTGTGATTCCAATCACTGAA 394
Query 172 ATTTGTGACGAGGCTGAAGAGAAATGCAGTCCAAGCTCTATTACTAAGAAGAGAGTCACT 231
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 395 ATTTGTGACGAGGCTGAAGAGAAATGCAGTCCAAGCACTATTTCTAGGAAGAGAGTCACT 454
Query 232 TTTGACTCCAAAGTCAAAACCTATGAACACGTTGTTTCAGAAGAATCTGTTGAACTCTCA 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 TTTGACTCCAAAGTCAAAACCTATGAACACGTTGTTTCAGAAGAATCTGTTGAACTCTCA 514
Query 292 GAAGAGAAGAACGAAGAGGTTGAATCCGAAAAGAGGTCACTGAAGTCAAGCAAGACTGAT 351
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 515 GAAGAGAAGAACGAAGAGGTTGAATCCGAAAAGAGGTCATTAAAGTCAAGCAAGACTGAT 574
Query 352 GATCAGTCTTCTTCTGAGATCATTGAGGTTGCCTCAAACTCCTCAGGGTCGTATCCTTCA 411
| | || ||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 575 G---A-------TC--AGATCATTGAGGTTGCCTCCAACTCCTCAGGGTCGTATCCTGAA 622
Query 412 AACCACAGATACAAGAATTGCAGAGAAAGTGATGATGACATAGAGGAGGATGATTTTGAC 471
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 623 AACCACAGATACAAGAATTGCAGAGAAAGTGATGATGACATAGAGGAGGATGAGTTTGAC 682
Query 472 TGCAGTGACAGTGATCTAGATGAAGATGAAGAGTATTACAGTGATATTGGATTTAGTGAG 531
||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 683 TGCAGTGACAGCGATCTAGATGAAGATGAAGAATATTACAGTGATGTTGGATTTAGTGAG 742
Query 532 GATAGCTTGCATATCCCAACCAA-AAAGGTTTATACTGAAGAGATTGGGGATAAAACAGA 590
||||||||||||| ||||||||| || ||||||||| |||| |||||||||||||||||
Sbjct 743 GATAGCTTGCATAACCCAACCAAGGAA-GTTTATACTCAAGATATTGGGGATAAAACAGA 801
Query 591 GGAGACTGATGCAAAGCTGAGAAACTCTAACGAGAGTGTTAGAGATGGAAACCACTATGA 650
||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 802 GGAGATTGATTCAAAGCTGAGAAGGTCTAACGAGACTGTTAGAGATGGAAACCACTATGA 861
Query 651 TGGCCAAGGAGTACTTAACCCGGTTGAGAATCTCACTCAGTGGAAATCCGCTAAATCCAA 710
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 862 TGGCCAAGGAGTACTTAACCCTGTTGAGAATCTTACTCAGTGGAAATCCGCTAAATCCAA 921
Query 711 AGGGAGGACAATGCAGAAACAGTCTCAAAAGGAGAACTCTAACTTCATTGCAGATCAAGA 770
|||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 922 AGGGAGAACAAAGCAGAAACAGTCTCAAAAGGAGAACTCTAACTTCATCGCAGATCAAGA 981
Query 771 AGAAAGAAGGGATTCCTCTTCTTTTGGCACAGACTCTCAGATTGATGATATAACACTCAG 830
||||| |||||||||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 982 AGAAAAAAGGGATTCCTCTTCTTTCGGTACAGACCCTCAGATTGATGATATAACACTCAG 1041
Query 831 CTTCAAACCAAAATGCAGAATTGAACCCAAGAAACTGAGAAACCAAGAACTGGCCGTTGA 890
| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1042 CGTCAAACCGAAATGCAGAATTGAACCCAAGAAACTGCGAAACCAAGAACTGGCCGTTGA 1101
Query 891 TGCTAGCCTTTCATCATGGTTGTCAACATCTGAGTCCGGTAGCGAATGCAACAGCGTCTC 950
||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||| |||
Sbjct 1102 TGCTAGCCTTTCAACATGGTTATCAACATCTGAGTCTGGTAGTGAATGCAACAGCGCCTC 1161
Query 951 TAGGTATACCTCT-ACACCCGAGAAACACAAGTCT---AGCTGCTACTCAAAACTGGTTA 1006
|| |||||||| | ||||||||||||| ||||||| |||||||||||||||| | |||
Sbjct 1162 TATGTATACCT-TAACACCCGAGAAACTCAAGTCTACCAGCTGCTACTCAAAACCGCTTA 1220
Query 1007 AAATCAACCATGACGATAGACCTGTACTATGCGCATTGACATTGGAGGATATCAAACAGT 1066
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1221 GAATCAATCATGACGATAGACCTGTATTATGCGCATTGACATTGGAGGATATCAAACAGT 1280
Query 1067 TCTCGGCTACATCTACGCCAAGGAAATCACCGAGCAAAAGCCCTGATGAGACACCTATTA 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 TCTCGGCTACATCTACGCCAAGGAAATCACCGAGCAAAAGCCCTGATGAGACACCTATTA 1340
Query 1127 TAGGCACAGTTGGTGGTTACTGGGGTAATCACTCAAAGGCAATAGATTGCGGCTCTGCAT 1186
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1341 TAGGCACAGTTGGTGGTTACTGGGGTAATCGCTCAAAGGCAATAGATTGCGGCTCTGCAT 1400
Query 1187 CTTCATTCAAGGGAATACCAAACACCACCAGCAAGTACAAAGAGGATAAGAGCGTAAATT 1246
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1401 CTTCATTCAAGGGAATACCAAACACCAGTAGCAAGTACAGAGAGGATAAGAGCGTAAATT 1460
Query 1247 GGCATTCAACTCCATTTGAGGCCAGACTGGAGAAAGCTTTGAACAACATAGACAAATAA 1305
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1461 GGCATTCAACACCATTTGAGGCAAGACTGGAGAAAGCTTTGAACAACATAGACAAATAA 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5